Fluorescent nucleobases as tools for studying DNA and RNA

W Xu, KM Chan, ET Kool - Nature chemistry, 2017 - nature.com
Understanding the diversity of dynamic structures and functions of DNA and RNA in biology
requires tools that can selectively and intimately probe these biomolecules. Synthetic …

Fundamental photophysics of isomorphic and expanded fluorescent nucleoside analogues

D Dziuba, P Didier, S Ciaco, A Barth… - Chemical Society …, 2021 - pubs.rsc.org
Fluorescent nucleoside analogues (FNAs) are structurally diverse mimics of the natural
essentially non-fluorescent nucleosides which have found numerous applications in probing …

A survey of the role of noncovalent sulfur interactions in drug design

BR Beno, KS Yeung, MD Bartberger… - Journal of medicinal …, 2015 - ACS Publications
Electron deficient, bivalent sulfur atoms have two areas of positive electrostatic potential, a
consequence of the low-lying σ* orbitals of the C–S bond that are available for interaction …

Probing of nucleic acid structures, dynamics, and interactions with environment-sensitive fluorescent labels

BY Michel, D Dziuba, R Benhida… - Frontiers in …, 2020 - frontiersin.org
Fluorescence labeling and probing are fundamental techniques for nucleic acid analysis
and quantification. However, new fluorescent probes and approaches are urgently needed …

Fluorescent probes for G‐quadruplex structures

BR Vummidi, J Alzeer, NW Luedtke - ChemBioChem, 2013 - Wiley Online Library
Mounting evidence supports the presence of biologically relevant G‐quadruplexes in single‐
cell organisms, but the existence of endogenous G‐quadruplex structures in mammalian …

Miniaturized chemical tags for optical imaging

S Benson, F De Moliner, W Tip**… - Angewandte Chemie …, 2022 - Wiley Online Library
Recent advances in optical bioimaging have prompted the need for minimal chemical
reporters that can retain the molecular recognition properties and activity profiles of …

CRISPR-Cas9 recognition of enzymatically synthesized base-modified nucleic acids

H Yang, E Eremeeva, M Abramov… - Nucleic Acids …, 2023 - academic.oup.com
An enzymatic method has been successfully established enabling the generation of partially
base-modified RNA (previously named RZA) constructs, in which all G residues were …

The chemistry and applications of RNA 2′-OH acylation

WA Velema, ET Kool - Nature Reviews Chemistry, 2020 - nature.com
RNA is a versatile biomolecule with a broad range of biological functions that go far beyond
its initially described role as a simple information carrier. The development of chemical …

Isomorphic Fluorescent Nucleosides

Y Tor - Accounts of Chemical Research, 2024 - ACS Publications
Conspectus In 1960, Weber prophesied that “There are many ways in which the properties
of the excited state can be utilized to study points of ignorance of the structure and function …

Fluorescent nucleoside analogs: probes for investigating nucleic acid structure and function

AA Tanpure, MG Pawar… - Israel Journal of …, 2013 - Wiley Online Library
Base‐modified fluorescent nucleoside analog probes have been very valuable in the study
of nucleic acid structure and function. Many of them structurally resemble natural bases, and …