Reap the crop wild relatives for breeding future crops

A Bohra, B Kilian, S Sivasankar, M Caccamo… - Trends in …, 2022 - cell.com
Crop wild relatives (CWRs) have provided breeders with several'game-changing'traits or
genes that have boosted crop resilience and global agricultural production. Advances in …

Status and prospects of genome‐wide association studies in plants

L Tibbs Cortes, Z Zhang, J Yu - The plant genome, 2021 - Wiley Online Library
Genome‐wide association studies (GWAS) have developed into a powerful and ubiquitous
tool for the investigation of complex traits. In large part, this was fueled by advances in …

Heterosis and hybrid crop breeding: a multidisciplinary review

MR Labroo, AJ Studer, JE Rutkoski - Frontiers in Genetics, 2021 - frontiersin.org
Although hybrid crop varieties are among the most popular agricultural innovations, the
rationale for hybrid crop breeding is sometimes misunderstood. Hybrid breeding is slower …

Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer

G Covarrubias-Pazaran - PloS one, 2016 - journals.plos.org
Most traits of agronomic importance are quantitative in nature, and genetic markers have
been used for decades to dissect such traits. Recently, genomic selection has earned …

Breeding for Fusarium head blight resistance in wheat—Progress and challenges

M Buerstmayr, B Steiner, H Buerstmayr - Plant breeding, 2020 - Wiley Online Library
Fusarium head blight is among the most extensively studied fungal diseases of wheat and
other small grain cereals due to its impact on yield and quality, but particularly due to its …

Ridge regression and other kernels for genomic selection with R package rrBLUP

JB Endelman - The plant genome, 2011 - Wiley Online Library
Many important traits in plant breeding are polygenic and therefore recalcitrant to traditional
marker‐assisted selection. Genomic selection addresses this complexity by including all …

Polygenic modeling with Bayesian sparse linear mixed models

X Zhou, P Carbonetto, M Stephens - PLoS genetics, 2013 - journals.plos.org
Both linear mixed models (LMMs) and sparse regression models are widely used in
genetics applications, including, recently, polygenic modeling in genome-wide association …

Whole-genome regression and prediction methods applied to plant and animal breeding

G de Los Campos, JM Hickey, R Pong-Wong… - Genetics, 2013 - academic.oup.com
Genomic-enabled prediction is becoming increasingly important in animal and plant
breeding and is also receiving attention in human genetics. Deriving accurate predictions of …

Genomic selection in plant breeding: from theory to practice

JL Jannink, AJ Lorenz, H Iwata - Briefings in functional …, 2010 - academic.oup.com
We intuitively believe that the dramatic drop in the cost of DNA marker information we have
experienced should have immediate benefits in accelerating the delivery of crop varieties …

Training set optimization under population structure in genomic selection

J Isidro, JL Jannink, D Akdemir, J Poland… - Theoretical and applied …, 2015 - Springer
Key message Population structure must be evaluated before optimization of the training set
population. Maximizing the phenotypic variance captured by the training set is important for …