CpG islands and the regulation of transcription

AM Deaton, A Bird - Genes & development, 2011 - genesdev.cshlp.org
Vertebrate CpG islands (CGIs) are short interspersed DNA sequences that deviate
significantly from the average genomic pattern by being GC-rich, CpG-rich, and …

[HTML][HTML] Understanding the relationship between DNA methylation and histone lysine methylation

NR Rose, RJ Klose - Biochimica et Biophysica Acta (BBA)-Gene Regulatory …, 2014 - Elsevier
DNA methylation acts as an epigenetic modification in vertebrate DNA. Recently it has
become clear that the DNA and histone lysine methylation systems are highly interrelated …

Understanding the language of Lys36 methylation at histone H3

EJ Wagner, PB Carpenter - Nature reviews Molecular cell biology, 2012 - nature.com
Histone side chains are post-translationally modified at multiple sites, including at Lys36 on
histone H3 (H3K36). Several enzymes from yeast and humans, including the …

Nascent transcript sequencing visualizes transcription at nucleotide resolution

LS Churchman, JS Weissman - Nature, 2011 - nature.com
Recent studies of transcription have revealed a level of complexity not previously
appreciated even a few years ago, both in the intricate use of post-initiation control and the …

Readers of histone modifications

M Yun, J Wu, JL Workman, B Li - Cell research, 2011 - nature.com
Histone modifications not only play important roles in regulating chromatin structure and
nuclear processes but also can be passed to daughter cells as epigenetic marks …

SET for life: biochemical activities and biological functions of SET domain-containing proteins

HM Herz, A Garruss, A Shilatifard - Trends in biochemical sciences, 2013 - cell.com
SET domain-containing proteins belong to a group of enzymes named after a common
domain that utilizes the cofactor S-adenosyl-L-methionine (SAM) to achieve methylation of …

Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange

M Smolle, S Venkatesh, MM Gogol, H Li… - Nature structural & …, 2012 - nature.com
Set2-mediated methylation of histone H3 Lys36 (H3K36) is a mark associated with the
coding sequences of actively transcribed genes, but it has a negative role during …

ZF-CxxC domain-containing proteins, CpG islands and the chromatin connection

HK Long, NP Blackledge… - Biochemical Society …, 2013 - portlandpress.com
Vertebrate DNA can be chemically modified by methylation of the 5 position of the cytosine
base in the context of CpG dinucleotides. This modification creates a binding site for MBD …

[HTML][HTML] CpG islands recruit a histone H3 lysine 36 demethylase

NP Blackledge, JC Zhou, MY Tolstorukov, AM Farcas… - Molecular cell, 2010 - cell.com
In higher eukaryotes, up to 70% of genes have high levels of nonmethylated
cytosine/guanine base pairs (CpGs) surrounding promoters and gene regulatory units …

The target of the NSD family of histone lysine methyltransferases depends on the nature of the substrate

Y Li, P Trojer, CF Xu, P Cheung, A Kuo… - Journal of Biological …, 2009 - ASBMB
The NSD (nuclear receptor SET domain-containing) family of histone lysine
methyltransferases is a critical participant in chromatin integrity as evidenced by the number …