The impact of transposable elements in adaptive evolution

L Schrader, J Schmitz - Molecular Ecology, 2019 - Wiley Online Library
The growing knowledge about the influence of transposable elements (TE s) on (a) long‐
term genome and transcriptome evolution;(b) genomic, transcriptomic and epigenetic …

Coevolution between transposable elements and recombination

TV Kent, J Uzunović, SI Wright - … Transactions of the …, 2017 - royalsocietypublishing.org
One of the most striking patterns of genome structure is the tight, typically negative,
association between transposable elements (TEs) and meiotic recombination rates. While …

Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly

T Zhu, L Wang, H Rimbert, JC Rodriguez… - The Plant …, 2021 - Wiley Online Library
Until recently, achieving a reference‐quality genome sequence for bread wheat was long
thought beyond the limits of genome sequencing and assembly technology, primarily due to …

Shifting the limits in wheat research and breeding using a fully annotated reference genome

International Wheat Genome Sequencing Consortium … - Science, 2018 - science.org
INTRODUCTION Wheat (Triticum aestivum L.) is the most widely cultivated crop on Earth,
contributing about a fifth of the total calories consumed by humans. Consequently, wheat …

The transcriptional landscape of polyploid wheat

RH Ramírez-González, P Borrill, D Lang… - Science, 2018 - science.org
INTRODUCTION Polyploidy, arising from whole-genome duplication or interspecific
hybridization, is ubiquitous across the plant and fungal kingdoms. The presence of highly …

The Atlantic salmon genome provides insights into rediploidization

S Lien, BF Koop, SR Sandve, JR Miller, MP Kent… - Nature, 2016 - nature.com
The whole-genome duplication 80 million years ago of the common ancestor of salmonids
(salmonid-specific fourth vertebrate whole-genome duplication, Ss4R) provides unique …

Genome sequences of five Sitopsis species of Aegilops and the origin of polyploid wheat B subgenome

LF Li, ZB Zhang, ZH Wang, N Li, Y Sha, XF Wang… - Molecular plant, 2022 - cell.com
Common wheat (Triticum aestivum, BBAADD) is a major staple food crop worldwide. The
diploid progenitors of the A and D subgenomes have been unequivocally identified; that of …

Impact of transposable elements on genome structure and evolution in bread wheat

T Wicker, H Gundlach, M Spannagl, C Uauy, P Borrill… - Genome biology, 2018 - Springer
Abstract Background Transposable elements (TEs) are major components of large plant
genomes and main drivers of genome evolution. The most recent assembly of hexaploid …

Computational tools to unmask transposable elements

P Goerner-Potvin, G Bourque - Nature Reviews Genetics, 2018 - nature.com
A substantial proportion of the genome of many species is derived from transposable
elements (TEs). Moreover, through various self-copying mechanisms, TEs continue to …

The epigenetic control of the transposable element life cycle in plant genomes and beyond

P Liu, D Cuerda-Gil, S Shahid… - Annual Review of …, 2022 - annualreviews.org
Within the life cycle of a living organism, another life cycle exists for the selfish genome
inhabitants, which are called transposable elements (TEs). These mobile sequences invade …