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Deep learning as a tool for ecology and evolution
Deep learning is driving recent advances behind many everyday technologies, including
speech and image recognition, natural language processing and autonomous driving. It is …
speech and image recognition, natural language processing and autonomous driving. It is …
Harnessing deep learning for population genetic inference
In population genetics, the emergence of large-scale genomic data for various species and
populations has provided new opportunities to understand the evolutionary forces that drive …
populations has provided new opportunities to understand the evolutionary forces that drive …
Efficient ancestry and mutation simulation with msprime 1.0
Stochastic simulation is a key tool in population genetics, since the models involved are
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
fastsimcoal2: demographic inference under complex evolutionary scenarios
Motivation fastsimcoal2 extends fastsimcoal, a continuous time coalescent-based genetic
simulation program, by enabling the estimation of demographic parameters under very …
simulation program, by enabling the estimation of demographic parameters under very …
[PDF][PDF] Deep learning in population genetics
Population genetics is transitioning into a data-driven discipline thanks to the availability of
large-scale genomic data and the need to study increasingly complex evolutionary …
large-scale genomic data and the need to study increasingly complex evolutionary …
Navigating the temporal continuum of effective population size
Effective population size, Ne, is a key evolutionary parameter that determines the levels of
genetic variation and efficacy of selection. Estimation and interpretation of Ne are essential …
genetic variation and efficacy of selection. Estimation and interpretation of Ne are essential …
Tree sequences as a general-purpose tool for population genetic inference
As population genetic data increase in size, new methods have been developed to store
genetic information in efficient ways, such as tree sequences. These data structures are …
genetic information in efficient ways, such as tree sequences. These data structures are …
Neural typographical error modeling via generative adversarial networks
JR Bellegarda, G Pagallo - US Patent 11,170,166, 2021 - Google Patents
the tasks can then be performed by executing one or more services of the electronic device,
and a relevant output responsive to the user request can be returned to the user.intelligent …
and a relevant output responsive to the user request can be returned to the user.intelligent …
Detecting adaptive introgression in human evolution using convolutional neural networks
Studies in a variety of species have shown evidence for positively selected variants
introduced into a population via introgression from another, distantly related population—a …
introduced into a population via introgression from another, distantly related population—a …
Deep convolutional and conditional neural networks for large-scale genomic data generation
Applications of generative models for genomic data have gained significant momentum in
the past few years, with scopes ranging from data characterization to generation of genomic …
the past few years, with scopes ranging from data characterization to generation of genomic …