[HTML][HTML] Transport capabilities of eleven gram-positive bacteria: comparative genomic analyses

GL Lorca, RD Barabote, V Zlotopolski, C Tran… - … et Biophysica Acta (BBA …, 2007 - Elsevier
The genomes of eleven Gram-positive bacteria that are important for human health and the
food industry, nine low G+ C lactic acid bacteria and two high G+ C Gram-positive …

TOPCONS: consensus prediction of membrane protein topology

A Bernsel, H Viklund, A Hennerdal… - Nucleic acids …, 2009 - academic.oup.com
Abstract TOPCONS (http://topcons. net/) is a web server for consensus prediction of
membrane protein topology. The underlying algorithm combines an arbitrary number of …

RIC‐3: a nicotinic acetylcholine receptor chaperone

NS Millar - British journal of pharmacology, 2008 - Wiley Online Library
RIC‐3 is a transmembrane protein which acts as a molecular chaperone of nicotinic
acetylcholine receptors (nAChRs). For some nAChR subtypes (such as homomeric α7 …

Transmembrane protein topology prediction using support vector machines

T Nugent, DT Jones - BMC bioinformatics, 2009 - Springer
Background Alpha-helical transmembrane (TM) proteins are involved in a wide range of
important biological processes such as cell signaling, transport of membrane-impermeable …

Improving the accuracy of transmembrane protein topology prediction using evolutionary information

DT Jones - Bioinformatics, 2007 - academic.oup.com
Motivation: Many important biological processes such as cell signaling, transport of
membrane-impermeable molecules, cell–cell communication, cell recognition and cell …

Transmembrane topology and signal peptide prediction using dynamic bayesian networks

SM Reynolds, L Käll, ME Riffle, JA Bilmes… - PLoS computational …, 2008 - journals.plos.org
Hidden Markov models (HMMs) have been successfully applied to the tasks of
transmembrane protein topology prediction and signal peptide prediction. In this paper we …

Biotin uptake in prokaryotes by solute transporters with an optional ATP-binding cassette-containing module

P Hebbeln, DA Rodionov… - Proceedings of the …, 2007 - National Acad Sciences
BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes.
Recent comparative genomic and experimental analyses pointed to the similarity of BioMN …

Characterization of YmgF, a 72-Residue Inner Membrane Protein That Associates with the Escherichia coli Cell Division Machinery

G Karimova, C Robichon, D Ladant - Journal of bacteriology, 2009 - Am Soc Microbiol
Formation of the Escherichia coli division septum is catalyzed by a number of essential
proteins (named Fts) that assemble into a ring-like structure at the future division site. Many …

The computer-aided discovery of novel family of the 5-HT6 serotonin receptor ligands among derivatives of 4-benzyl-1, 3, 5-triazine

D Łażewska, R Kurczab, M Więcek, K Kamińska… - European Journal of …, 2017 - Elsevier
The work describes a discovery of new chemical family of potent ligands for the 5-HT 6
serotonin receptors. During the search for new histamine H 4 receptor antagonists among 1 …

Impact of template choice on homology model efficiency in virtual screening

K Rataj, J Witek, S Mordalski, T Kosciolek… - Journal of chemical …, 2014 - ACS Publications
Homology modeling is a reliable method of predicting the three-dimensional structures of
proteins that lack NMR or X-ray crystallographic data. It employs the assumption that a …