Chromatin accessibility and the regulatory epigenome

SL Klemm, Z Shipony, WJ Greenleaf - Nature Reviews Genetics, 2019 - nature.com
Physical access to DNA is a highly dynamic property of chromatin that plays an essential
role in establishing and maintaining cellular identity. The organization of accessible …

Functions of DNA methylation: islands, start sites, gene bodies and beyond

PA Jones - Nature reviews genetics, 2012 - nature.com
DNA methylation is frequently described as a'silencing'epigenetic mark, and indeed this
function of 5-methylcytosine was originally proposed in the 1970s. Now, thanks to improved …

[HTML][HTML] Facilitators and impediments of the pluripotency reprogramming factors' initial engagement with the genome

A Soufi, G Donahue, KS Zaret - Cell, 2012 - cell.com
The ectopic expression of transcription factors can reprogram cell fate, yet it is unknown how
the initial binding of factors to the genome relates functionally to the binding seen in the …

A double take on bivalent promoters

P Voigt, WW Tee, D Reinberg - Genes & development, 2013 - genesdev.cshlp.org
Histone modifications and chromatin-associated protein complexes are crucially involved in
the control of gene expression, supervising cell fate decisions and differentiation. Many …

The DNA methylation landscape in cancer

K Skvortsova, C Stirzaker, P Taberlay - Essays in biochemistry, 2019 - portlandpress.com
As one of the most abundant and well-studied epigenetic modifications, DNA methylation
plays an essential role in normal development and cellular biology. Global alterations to the …

lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs

L Yang, C Lin, C **, JC Yang, B Tanasa, W Li… - Nature, 2013 - nature.com
Although recent studies have indicated roles of long non-coding RNAs (lncRNAs) in
physiological aspects of cell-type determination and tissue homeostasis, their potential …

Chromatin accessibility profiling methods

L Minnoye, GK Marinov, T Krausgruber, L Pan… - Nature Reviews …, 2021 - nature.com
Chromatin accessibility, or the physical access to chromatinized DNA, is a widely studied
characteristic of the eukaryotic genome. As active regulatory DNA elements are generally …

Chromatin modifications as determinants of muscle stem cell quiescence and chronological aging

L Liu, TH Cheung, GW Charville, BMC Hurgo, T Leavitt… - Cell reports, 2013 - cell.com
The ability to maintain quiescence is critical for the long-term maintenance of a functional
stem cell pool. To date, the epigenetic and transcriptional characteristics of quiescent stem …

Single-cell multi-omics sequencing of mouse early embryos and embryonic stem cells

F Guo, L Li, J Li, X Wu, B Hu, P Zhu, L Wen, F Tang - Cell research, 2017 - nature.com
Single-cell epigenome sequencing techniques have recently been developed. However, the
combination of different layers of epigenome sequencing in an individual cell has not yet …

[HTML][HTML] eRNAs promote transcription by establishing chromatin accessibility at defined genomic loci

K Mousavi, H Zare, S Dell'Orso, L Grontved… - Molecular cell, 2013 - cell.com
Transcription factors and DNA regulatory binding motifs are fundamental components of the
gene regulatory network. Here, by using genome-wide binding profiling, we show extensive …