Big data and the industrialization of neuroscience: A safe roadmap for understanding the brain?

Y Frégnac - Science, 2017 - science.org
New technologies in neuroscience generate reams of data at an exponentially increasing
rate, spurring the design of very-large-scale data-mining initiatives. Several supranational …

[HTML][HTML] Analyzing biological and artificial neural networks: challenges with opportunities for synergy?

DGT Barrett, AS Morcos, JH Macke - Current opinion in neurobiology, 2019 - Elsevier
Highlights•Artificial and biological neural networks can be analyzed using similar
methods.•Neural analysis has revealed similarities between the representations in artificial …

Burst-dependent synaptic plasticity can coordinate learning in hierarchical circuits

A Payeur, J Guerguiev, F Zenke, BA Richards… - Nature …, 2021 - nature.com
Synaptic plasticity is believed to be a key physiological mechanism for learning. It is well
established that it depends on pre-and postsynaptic activity. However, models that rely …

NetPyNE, a tool for data-driven multiscale modeling of brain circuits

S Dura-Bernal, BA Suter, P Gleeson, M Cantarelli… - Elife, 2019 - elifesciences.org
Biophysical modeling of neuronal networks helps to integrate and interpret rapidly growing
and disparate experimental datasets at multiple scales. The NetPyNE tool (www. netpyne …

Mesoscale map** of mouse cortex reveals frequency-dependent cycling between distinct macroscale functional modules

MP Vanni, AW Chan, M Balbi, G Silasi… - Journal of …, 2017 - Soc Neuroscience
Connectivity map** based on resting-state activity in mice has revealed functional motifs
of correlated activity. However, the rules by which motifs organize into larger functional …

The microcircuits of striatum in silico

JJJ Hjorth, A Kozlov, I Carannante… - Proceedings of the …, 2020 - National Acad Sciences
The basal ganglia play an important role in decision making and selection of action primarily
based on input from cortex, thalamus, and the dopamine system. Their main input structure …

Real-time spike sorting platform for high-density extracellular probes with ground-truth validation and drift correction

JJ Jun, C Mitelut, C Lai, SL Gratiy, CA Anastassiou… - BioRxiv, 2017 - biorxiv.org
Electrical recordings from a large array of electrodes give us access to neural population
activity with single-cell, single-spike resolution. These recordings contain extracellular …

Variance and invariance of neuronal long-term representations

C Clopath, T Bonhoeffer… - … Transactions of the …, 2017 - royalsocietypublishing.org
The brain extracts behaviourally relevant sensory input to produce appropriate motor output.
On the one hand, our constantly changing environment requires this transformation to be …

[HTML][HTML] Human cortical pyramidal neurons: from spines to spikes via models

G Eyal, MB Verhoog, G Testa-Silva… - Frontiers in cellular …, 2018 - frontiersin.org
We present detailed models of pyramidal cells from human neocortex, including models on
their excitatory synapses, dendritic spines, dendritic NMDA-and somatic/axonal Na+ spikes …

Generative models of brain dynamics

M Ramezanian-Panahi, G Abrevaya… - Frontiers in artificial …, 2022 - frontiersin.org
This review article gives a high-level overview of the approaches across different scales of
organization and levels of abstraction. The studies covered in this paper include …