Bacterial ferrous iron transport: the Feo system

CKY Lau, KD Krewulak, HJ Vogel - FEMS microbiology reviews, 2016 - academic.oup.com
To maintain iron homeostasis within the cell, bacteria have evolved various types of iron
acquisition systems. Ferric iron (Fe3+) is the dominant species in an oxygenated …

STIM proteins: dynamic calcium signal transducers

J Soboloff, BS Rothberg, M Madesh… - Nature reviews Molecular …, 2012 - nature.com
Stromal interaction molecule (STIM) proteins function in cells as dynamic coordinators of
cellular calcium (Ca2+) signals. Spanning the endoplasmic reticulum (ER) membrane, they …

Clades of huge phages from across Earth's ecosystems

B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk… - Nature, 2020 - nature.com
Bacteriophages typically have small genomes and depend on their bacterial hosts for
replication. Here we sequenced DNA from diverse ecosystems and found hundreds of …

JPred4: a protein secondary structure prediction server

A Drozdetskiy, C Cole, J Procter… - Nucleic acids …, 2015 - academic.oup.com
Abstract JPred4 (http://www. compbio. dundee. ac. uk/jpred4) is the latest version of the
popular JPred protein secondary structure prediction server which provides predictions by …

Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria

K Saito, H Kratzat, A Campbell, R Buschauer… - Nature, 2022 - nature.com
Ribosome rescue pathways recycle stalled ribosomes and target problematic mRNAs and
aborted proteins for degradation,. In bacteria, it remains unclear how rescue pathways …

Explainable deep hypergraph learning modeling the peptide secondary structure prediction

Y Jiang, R Wang, J Feng, J **, S Liang, Z Li… - Advanced …, 2023 - Wiley Online Library
Accurately predicting peptide secondary structures remains a challenging task due to the
lack of discriminative information in short peptides. In this study, PHAT is proposed, a deep …

[HTML][HTML] Ragulator is a GEF for the rag GTPases that signal amino acid levels to mTORC1

L Bar-Peled, LD Schweitzer, R Zoncu, DM Sabatini - Cell, 2012 - cell.com
Summary The mTOR Complex 1 (mTORC1) pathway regulates cell growth in response to
numerous cues, including amino acids, which promote mTORC1 translocation to the …

Jalview Version 2—a multiple sequence alignment editor and analysis workbench

AM Waterhouse, JB Procter, DMA Martin… - …, 2009 - academic.oup.com
Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of
multiple sequence alignments. Core features include keyboard and mouse-based editing …

Sixty-five years of the long march in protein secondary structure prediction: the final stretch?

Y Yang, J Gao, J Wang, R Heffernan… - Briefings in …, 2018 - academic.oup.com
Protein secondary structure prediction began in 1951 when Pauling and Corey predicted
helical and sheet conformations for protein polypeptide backbone even before the first …

Structural and functional insight into regulation of kinesin-1 by microtubule-associated protein MAP7

LS Ferro, Q Fang, L Eshun-Wilson, J Fernandes… - Science, 2022 - science.org
Microtubule (MT)–associated protein 7 (MAP7) is a required cofactor for kinesin-1–driven
transport of intracellular cargoes. Using cryo–electron microscopy and single–molecule …