Exploring free-energy landscapes of intrinsically disordered proteins at atomic resolution using NMR spectroscopy
The last 15 years have seen a paradigm shift in our understanding of protein biochemistry,
with the realization that an unexpectedly high fraction of the human genome codes for …
with the realization that an unexpectedly high fraction of the human genome codes for …
Visualizing transient dark states by NMR spectroscopy
Myriad biological processes proceed through states that defy characterization by
conventional atomic-resolution structural biological methods. The invisibility of these …
conventional atomic-resolution structural biological methods. The invisibility of these …
Monomeric Aβ1–40 and Aβ1–42 Peptides in Solution Adopt Very Similar Ramachandran Map Distributions That Closely Resemble Random Coil
The pathogenesis of Alzheimer's disease is characterized by the aggregation and fibrillation
of amyloid peptides Aβ1–40 and Aβ1–42 into amyloid plaques. Despite strong potential …
of amyloid peptides Aβ1–40 and Aβ1–42 into amyloid plaques. Despite strong potential …
Heterogeneity in protein folding and unfolding reactions
Proteins have dynamic structures that undergo chain motions on time scales spanning from
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …
[HTML][HTML] Protein unfolding mechanisms and their effects on folding experiments
LJ Lapidus - F1000Research, 2017 - ncbi.nlm.nih.gov
In this review, I discuss the various methods researchers use to unfold proteins in the lab in
order to understand protein folding both in vitro and in vivo. The four main techniques …
order to understand protein folding both in vitro and in vivo. The four main techniques …
Acyl-CoA-binding protein (ACBP): a phylogenetically conserved appetite stimulator
Recently, we reported that, in mice, hunger causes the autophagy-dependent release of a
protein called “acyl-CoA-binding protein” or “diazepam binding inhibitor”(ACBP/DBI) from …
protein called “acyl-CoA-binding protein” or “diazepam binding inhibitor”(ACBP/DBI) from …
Statistical mechanics of the denatured state of a protein using replica-averaged metadynamics
The characterization of denatured states of proteins is challenging because the lack of
permanent structure in these states makes it difficult to apply to them standard methods of …
permanent structure in these states makes it difficult to apply to them standard methods of …
[HTML][HTML] Mechanistic studies of the biogenesis and folding of outer membrane proteins in vitro and in vivo: what have we learned to date?
Research into the mechanisms by which proteins fold into their native structures has been
on-going since the work of Anfinsen in the 1960s. Since that time, the folding mechanisms of …
on-going since the work of Anfinsen in the 1960s. Since that time, the folding mechanisms of …
Effects of ligand binding on the energy landscape of Acyl-CoA-binding protein
Binding of ligands is often crucial for function yet the effects of ligand binding on the
mechanical stability and energy landscape of proteins are incompletely understood. Here …
mechanical stability and energy landscape of proteins are incompletely understood. Here …
Denatured state conformational biases in three-helix bundles containing divergent sequences localize near turns and helix cap** residues
MJ Leavens, LE Spang, MM Cherney, BE Bowler - Biochemistry, 2021 - ACS Publications
Rhodopseudomonas palustris cytochrome c′, a four-helix bundle, and the second ubiquitin-
associated domain, UBA (2), a three-helix bundle from the human homologue of yeast …
associated domain, UBA (2), a three-helix bundle from the human homologue of yeast …