Exploring free-energy landscapes of intrinsically disordered proteins at atomic resolution using NMR spectroscopy

MR Jensen, M Zweckstetter, J Huang… - Chemical …, 2014 - ACS Publications
The last 15 years have seen a paradigm shift in our understanding of protein biochemistry,
with the realization that an unexpectedly high fraction of the human genome codes for …

Visualizing transient dark states by NMR spectroscopy

NJ Anthis, GM Clore - Quarterly Reviews of Biophysics, 2015 - cambridge.org
Myriad biological processes proceed through states that defy characterization by
conventional atomic-resolution structural biological methods. The invisibility of these …

Monomeric Aβ1–40 and Aβ1–42 Peptides in Solution Adopt Very Similar Ramachandran Map Distributions That Closely Resemble Random Coil

J Roche, Y Shen, JH Lee, J Ying, A Bax - Biochemistry, 2016 - ACS Publications
The pathogenesis of Alzheimer's disease is characterized by the aggregation and fibrillation
of amyloid peptides Aβ1–40 and Aβ1–42 into amyloid plaques. Despite strong potential …

Heterogeneity in protein folding and unfolding reactions

S Bhatia, JB Udgaonkar - Chemical Reviews, 2022 - ACS Publications
Proteins have dynamic structures that undergo chain motions on time scales spanning from
picoseconds to seconds. Resolving the resultant conformational heterogeneity is essential …

[HTML][HTML] Protein unfolding mechanisms and their effects on folding experiments

LJ Lapidus - F1000Research, 2017 - ncbi.nlm.nih.gov
In this review, I discuss the various methods researchers use to unfold proteins in the lab in
order to understand protein folding both in vitro and in vivo. The four main techniques …

Acyl-CoA-binding protein (ACBP): a phylogenetically conserved appetite stimulator

N Charmpilas, C Ruckenstuhl, V Sica, S Büttner… - Cell Death & …, 2020 - nature.com
Recently, we reported that, in mice, hunger causes the autophagy-dependent release of a
protein called “acyl-CoA-binding protein” or “diazepam binding inhibitor”(ACBP/DBI) from …

Statistical mechanics of the denatured state of a protein using replica-averaged metadynamics

C Camilloni, M Vendruscolo - Journal of the American Chemical …, 2014 - ACS Publications
The characterization of denatured states of proteins is challenging because the lack of
permanent structure in these states makes it difficult to apply to them standard methods of …

[HTML][HTML] Mechanistic studies of the biogenesis and folding of outer membrane proteins in vitro and in vivo: what have we learned to date?

LM McMorran, DJ Brockwell, SE Radford - Archives of biochemistry and …, 2014 - Elsevier
Research into the mechanisms by which proteins fold into their native structures has been
on-going since the work of Anfinsen in the 1960s. Since that time, the folding mechanisms of …

Effects of ligand binding on the energy landscape of Acyl-CoA-binding protein

P Sonar, L Bellucci, A Mossa, PO Heidarsson… - Biophysical …, 2020 - cell.com
Binding of ligands is often crucial for function yet the effects of ligand binding on the
mechanical stability and energy landscape of proteins are incompletely understood. Here …

Denatured state conformational biases in three-helix bundles containing divergent sequences localize near turns and helix cap** residues

MJ Leavens, LE Spang, MM Cherney, BE Bowler - Biochemistry, 2021 - ACS Publications
Rhodopseudomonas palustris cytochrome c′, a four-helix bundle, and the second ubiquitin-
associated domain, UBA (2), a three-helix bundle from the human homologue of yeast …