[HTML][HTML] The hydrophobic effects: Our current understanding

Q Sun - Molecules, 2022 - mdpi.com
Hydrophobic interactions are involved in and believed to be the fundamental driving force of
many chemical and biological phenomena in aqueous environments. This review focuses …

Water models for biomolecular simulations

AV Onufriev, S Izadi - Wiley Interdisciplinary Reviews …, 2018 - Wiley Online Library
Modern simulation and modeling approaches to investigation of biomolecular structure and
function rely heavily on a variety of methods—water models—to approximate the influence …

Simulating water with rigid non-polarizable models: a general perspective

C Vega, JLF Abascal - Physical Chemistry Chemical Physics, 2011 - pubs.rsc.org
Over the last forty years many computer simulations of water have been performed using
rigid non-polarizable models. Since these models describe water interactions in an …

A general purpose model for the condensed phases of water: TIP4P/2005

JLF Abascal, C Vega - The Journal of chemical physics, 2005 - pubs.aip.org
A potential model intended to be a general purpose model for the condensed phases of
water is presented. TIP4P/2005 is a rigid four site model which consists of three fixed point …

A modified TIP3P water potential for simulation with Ewald summation

DJ Price, CL Brooks III - The Journal of chemical physics, 2004 - pubs.aip.org
The charges and Lennard-Jones parameters of the TIP3P water potential have been
modified to improve its performance under the common condition for molecular dynamics …

Benchmark oxygen-oxygen pair-distribution function of ambient water from x-ray diffraction measurements with a wide Q-range

LB Skinner, C Huang, D Schlesinger… - The Journal of …, 2013 - pubs.aip.org
Four recent x-ray diffraction measurements of ambient liquid water are reviewed here. Each
of these measurements represents a significant development of the x-ray diffraction …

Auxiliary density matrix methods for Hartree− Fock exchange calculations

M Guidon, J Hutter… - Journal of chemical theory …, 2010 - ACS Publications
The calculation of Hartree− Fock exchange (HFX) is computationally demanding for large
systems described with high-quality basis sets. In this work, we show that excellent …

Hydrogen bonding definitions and dynamics in liquid water

R Kumar, JR Schmidt, JL Skinner - The Journal of chemical physics, 2007 - pubs.aip.org
X-ray and neutron diffractions, vibrational spectroscopy, and x-ray Raman scattering and
absorption experiments on water are often interpreted in terms of hydrogen bonding. To this …

A reappraisal of what we have learnt during three decades of computer simulations on water

B Guillot - Journal of molecular liquids, 2002 - Elsevier
Due to its ubiquity in our environment (near or far remote) water is the most investigated
liquid of the literature. Since the advent of molecular simulations in the sixties the key point …