Integration of single-cell RNA-seq data into population models to characterize cancer metabolism

C Damiani, D Maspero, M Di Filippo… - PLoS computational …, 2019 - journals.plos.org
Metabolic reprogramming is a general feature of cancer cells. Regrettably, the
comprehensive quantification of metabolites in biological specimens does not promptly …

Single-cell digital twins for cancer preclinical investigation

MD Filippo, C Damiani, M Vanoni, D Maspero… - Metabolic Flux Analysis …, 2020 - Springer
Laboratory models derived from clinical samples represent a solid platform in preclinical
research for drug testing and investigation of disease mechanisms. The integration of these …

popFBA: tackling intratumour heterogeneity with Flux Balance Analysis

C Damiani, M Di Filippo, D Pescini, D Maspero… - …, 2017 - academic.oup.com
Motivation Intratumour heterogeneity poses many challenges to the treatment of cancer.
Unfortunately, the transcriptional and metabolic information retrieved by currently available …

Scales and multimodal flux distributions in stationary metabolic network models via thermodynamics

D De Martino - Physical review E, 2017 - APS
In this work it is shown that scale-free tails in metabolic flux distributions inferred in stationary
models are an artifact due to reactions involved in thermodynamically unfeasible cycles …

Definition of a transparent constraint-based modeling and simulation layer for the management of complex systems

K Henares, JL Risco-Martín… - 2019 Spring Simulation …, 2019 - ieeexplore.ieee.org
Modeling and Simulation (M&S) is one of the most multifaceted topics present today in both
industry and academia. However, we are involved in a new M&S paradigm. Systems are …

Integration of single-cell RNA-seq data into metabolic models to characterize tumour cell populations

C Damiani, D Maspero, M Di Filippo, R Colombo… - bioRxiv, 2018 - biorxiv.org
Motivation Metabolic reprogramming is a general feature of cancer cells. Regrettably, the
comprehensive quantification of metabolites in biological specimens does not promptly …