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[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
Taxonomy, ecology and biotechnological applications of thraustochytrids: A review
Thraustochytrids were first discovered in 1934, and since the 1960's they have been
increasingly studied for their beneficial and deleterious effects. This review aims to provide …
increasingly studied for their beneficial and deleterious effects. This review aims to provide …
The gut mycobiome of the Human Microbiome Project healthy cohort
Background Most studies describing the human gut microbiome in healthy and diseased
states have emphasized the bacterial component, but the fungal microbiome (ie, the …
states have emphasized the bacterial component, but the fungal microbiome (ie, the …
Biodegradability of polyethylene by bacteria and fungi from Dandora dumpsite Nairobi-Kenya
This study aimed at isolating and identifying bacteria and fungi with the capacity to degrade
low density polyethylene (LDPE). The level of biodegradation of LDPE sheets with bacterial …
low density polyethylene (LDPE). The level of biodegradation of LDPE sheets with bacterial …
Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
Viruses impact nearly all organisms on Earth, with ripples of influence in agriculture, health,
and biogeochemical processes. However, very little is known about RNA viruses in an …
and biogeochemical processes. However, very little is known about RNA viruses in an …
Design and evaluation of Illumina MiSeq-compatible, 18S rRNA gene-specific primers for improved characterization of mixed phototrophic communities
The use of high-throughput sequencing technologies with the 16S rRNA gene for
characterization of bacterial and archaeal communities has become routine. However, the …
characterization of bacterial and archaeal communities has become routine. However, the …
Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples
Advances in the sequencing of DNA extracted from media such as soil and water offer huge
opportunities for biodiversity monitoring and assessment, particularly where the collection or …
opportunities for biodiversity monitoring and assessment, particularly where the collection or …
Application of sewage sludge to agricultural soil increases the abundance of antibiotic resistance genes without altering the composition of prokaryotic communities
The application of sewage sludge as soil amendment is a common agricultural practice.
However, wastewater treatment plants, sewage sludge and sewage sludge-amended soils …
However, wastewater treatment plants, sewage sludge and sewage sludge-amended soils …
Diversity of plant DNA in stool is linked to dietary quality, age, and household income
Eating a varied diet is a central tenet of good nutrition. Here, we develop a molecular tool to
quantify human dietary plant diversity by applying DNA metabarcoding with the chloroplast …
quantify human dietary plant diversity by applying DNA metabarcoding with the chloroplast …
Supervised machine learning outperforms taxonomy‐based environmental DNA metabarcoding applied to biomonitoring
Biodiversity monitoring is the standard for environmental impact assessment of
anthropogenic activities. Several recent studies showed that high‐throughput amplicon …
anthropogenic activities. Several recent studies showed that high‐throughput amplicon …