[HTML][HTML] Yeast creates a niche for symbiotic lactic acid bacteria through nitrogen overflow

O Ponomarova, N Gabrielli, DC Sévin, M Mülleder… - Cell systems, 2017 - cell.com
Many microorganisms live in communities and depend on metabolites secreted by fellow
community members for survival. Yet our knowledge of interspecies metabolic …

MFS transporters required for multidrug/multixenobiotic (MD/MX) resistance in the model yeast: understanding their physiological function through post-genomic …

SC Dos Santos, MC Teixeira, PJ Dias… - Frontiers in …, 2014 - frontiersin.org
Multidrug/Multixenobiotic resistance (MDR/MXR) is a widespread phenomenon with clinical,
agricultural and biotechnological implications, where MDR/MXR transporters that are …

YEASTRACT+: a portal for cross-species comparative genomics of transcription regulation in yeasts

PT Monteiro, J Oliveira, P Pais, M Antunes… - Nucleic acids …, 2020 - academic.oup.com
The YEASTRACT+ information system (http://YEASTRACT-PLUS. org/) is a wide-scope tool
for the analysis and prediction of transcription regulatory associations at the gene and …

YEASTRACT+: a portal for the exploitation of global transcription regulation and metabolic model data in yeast biotechnology and pathogenesis

MC Teixeira, R Viana, M Palma, J Oliveira… - Nucleic acids …, 2023 - academic.oup.com
Abstract YEASTRACT+ (http://yeastract-plus. org/) is a tool for the analysis, prediction and
modelling of transcription regulatory data at the gene and genomic levels in yeasts. It …

Doxorubicin induces an extensive transcriptional and metabolic rewiring in yeast cells

H Taymaz-Nikerel, ME Karabekmez, S Eraslan… - Scientific reports, 2018 - nature.com
Doxorubicin is one of the most effective chemotherapy drugs used against solid tumors in
the treatment of several cancer types. Two different mechanisms,(i) intercalation of …

The development and characterization of synthetic minimal yeast promoters

H Redden, HS Alper - Nature communications, 2015 - nature.com
Synthetic promoters, especially minimally sized, are critical for advancing fungal synthetic
biology. Fungal promoters often span hundreds of base pairs, nearly ten times the amount of …

Quantitative nature of overexpression experiments

H Moriya - Molecular biology of the cell, 2015 - molbiolcell.org
Overexpression experiments are sometimes considered as qualitative experiments
designed to identify novel proteins and study their function. However, in order to draw …

YEASTRACT: an upgraded database for the analysis of transcription regulatory networks in Saccharomyces cerevisiae

MC Teixeira, PT Monteiro, M Palma… - Nucleic acids …, 2018 - academic.oup.com
Abstract The YEAst Search for Transcriptional Regulators And Consensus Tracking
(YEASTRACT—www. yeastract. com) information system has been, for 11 years, a key tool …

Flux Control at the Malonyl-CoA Node through Hierarchical Dynamic Pathway Regulation in Saccharomyces cerevisiae

F David, J Nielsen, V Siewers - ACS synthetic biology, 2016 - ACS Publications
The establishment of a heterologous pathway in a microbial host for the production of
industrially relevant chemicals at high titers and yields requires efficient adjustment of the …

Advances in the integration of transcriptional regulatory information into genome-scale metabolic models

RP Vivek-Ananth, A Samal - Biosystems, 2016 - Elsevier
A major goal of systems biology is to build predictive computational models of cellular
metabolism. Availability of complete genome sequences and wealth of legacy biochemical …