Next generation sequencing approaches to evaluate water and wastewater quality
The emergence of next generation sequencing (NGS) is revolutionizing the potential to
address complex microbiological challenges in the water industry. NGS technologies can …
address complex microbiological challenges in the water industry. NGS technologies can …
Environmental biofilms as reservoirs for antimicrobial resistance
G Flores-Vargas, J Bergsveinson… - Frontiers in …, 2021 - frontiersin.org
Characterizing the response of microbial communities to a range of antibiotic concentrations
is one of the strategies used to understand the impact of antibiotic resistance. Many studies …
is one of the strategies used to understand the impact of antibiotic resistance. Many studies …
Coming-of-age characterization of soil viruses: a user's guide to virus isolation, detection within metagenomes, and viromics
The study of soil viruses, though not new, has languished relative to the study of marine
viruses. This is particularly due to challenges associated with separating virions from …
viruses. This is particularly due to challenges associated with separating virions from …
Analysis of different size fractions provides a more complete perspective of viral diversity in a freshwater embayment
Inspired by recent discoveries of the prevalence of large viruses in the environment, we
reassessed the longstanding approach of filtering water through small-pore-size filters to …
reassessed the longstanding approach of filtering water through small-pore-size filters to …
Potential applications of human viral metagenomics and reference materials: considerations for current and future viruses
TM Santiago-Rodriguez… - Applied and Environmental …, 2020 - Am Soc Microbiol
Viruses are ubiquitous particles comprising genetic material that can infect bacteria,
archaea, and fungi, as well as human and other animal cells. Given that determining virus …
archaea, and fungi, as well as human and other animal cells. Given that determining virus …
Viral diversity is linked to bacterial community composition in alpine stream biofilms
M Bekliz, P Pramateftaki, TJ Battin… - ISME …, 2022 - academic.oup.com
Biofilms play pivotal roles in fluvial ecosystems, yet virtually nothing is known about viruses
in these communities. Leveraging an optimized sample-to-sequence pipeline, we studied …
in these communities. Leveraging an optimized sample-to-sequence pipeline, we studied …
A step-by-step sequence-based analysis of virome enrichment protocol for freshwater and sediment samples
Cultivation-free metagenomic analysis afforded unprecedented details on the diversity,
structure and potential functions of microbial communities in different environments. When …
structure and potential functions of microbial communities in different environments. When …
The microbial genomics of glacier-fed streams: adaptations to an extreme ecosystem
M Bourquin - 2024 - infoscience.epfl.ch
Glacier-fed streams are the cold, ultra-oligotrophic, and unstable streams that are fed by
glacial meltwater. Despite these extreme conditions, they harbour a diverse and abundant …
glacial meltwater. Despite these extreme conditions, they harbour a diverse and abundant …
Diversity, Relative Abundance, and Functional Potential of Viral and Bacterial Communities
CN Palermo - 2022 - search.proquest.com
Viral and bacterial communities in Hamilton Harbour were explored to discern seasonal and
spatial changes in diversity, relative abundance, and functional potentials. The following …
spatial changes in diversity, relative abundance, and functional potentials. The following …
Comparing the diversity and relative abundance of free and particle-associated aquatic viruses
Metagenomics has enabled rapid increases in virus discovery, in turn permitting revisions of
viral taxonomy and our understanding of the ecology of viruses and their hosts. Inspired by …
viral taxonomy and our understanding of the ecology of viruses and their hosts. Inspired by …