Unbiased spatial proteomics with single-cell resolution in tissues

A Mund, AD Brunner, M Mann - Molecular cell, 2022 - cell.com
Mass spectrometry (MS)-based proteomics has become a powerful technology to quantify
the entire complement of proteins in cells or tissues. Here, we review challenges and recent …

Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbation

AD Brunner, M Thielert, C Vasilopoulou… - Molecular systems …, 2022 - embopress.org
Single‐cell technologies are revolutionizing biology but are today mainly limited to imaging
and deep sequencing. However, proteins are the main drivers of cellular function and in …

Deep topographic proteomics of a human brain tumour

S Davis, C Scott, J Oetjen, PD Charles… - Nature …, 2023 - nature.com
The spatial organisation of cellular protein expression profiles within tissue determines
cellular function and is key to understanding disease pathology. To define molecular …

Graph neural networks learn emergent tissue properties from spatial molecular profiles

DS Fischer, M Ali, S Richter, A Ertürk, F Theis - bioRxiv, 2022 - biorxiv.org
Tissue phenotypes such as metabolic states, inflammation, and tumor properties are
functions of molecular states of cells that constitute the tissue. Recent spatial molecular …

CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells

T Tsuchiya, H Hori, H Ozaki - Bioinformatics, 2022 - academic.oup.com
Motivation Cell–cell communications regulate internal cellular states, eg gene expression
and cell functions, and play pivotal roles in normal development and disease states …

On the pitfalls of deep image segmentation for lightsheet microscopy

R Al-Maskari, JC Paetzold, I Horvath… - Medical Imaging with …, 2022 - openreview.net
Fluorescence light sheet microscopy (LSM) of tissue cleared samples enables holistic 3D
imaging of the human brain and the full murine body. While this novel imaging method …

CIMT 2022: Report on the 19th Annual Meeting of the Association for Cancer Immunotherapy

PA Berger, J Freitag, SC Linkenbach… - Human Vaccines & …, 2022 - Taylor & Francis
ABSTRACT The 19th Annual Meeting of the Association for Cancer Immunotherapy (CIMT),
Europe's cancer immunotherapy meeting, was the first in-person event organized by CIMT …

[PDF][PDF] Fluid Homeostasis in Neuroinflammation

M Ramos - 2022 - portal.research.lu.se
Maintaining fluid homeostasis is very important for brain health, partly because the
cerebrospinal fluid, which washes in and out, cleans the brain from accumulated waste. This …

[CITATA][C] 179 Methods and Challenges of Tissue Clearing Engineering for Tissue Complexity 5

AH Nguyen, DH Tran, H Cao - Cutting-edge Technologies in Biological … - River Publishers