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A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …
monitoring biodiversity in ecology. However, taxa identifications produced through …
From multi-omics approaches to personalized medicine in myocardial infarction
Myocardial infarction (MI) is a prevalent cardiovascular disease characterized by myocardial
necrosis resulting from coronary artery ischemia and hypoxia, which can lead to severe …
necrosis resulting from coronary artery ischemia and hypoxia, which can lead to severe …
The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update
Nucleic acids research, 2024 - academic.oup.com
Abstract Galaxy (https://galaxyproject. org) is deployed globally, predominantly through free-
to-use services, supporting user-driven research that broadens in scope each year. Users …
to-use services, supporting user-driven research that broadens in scope each year. Users …
OME-Zarr: a cloud-optimized bioimaging file format with international community support
J Moore, D Basurto-Lozada, S Besson… - Histochemistry and Cell …, 2023 - Springer
A growing community is constructing a next-generation file format (NGFF) for bioimaging to
overcome problems of scalability and heterogeneity. Organized by the Open Microscopy …
overcome problems of scalability and heterogeneity. Organized by the Open Microscopy …
Enhanced weathering in the US Corn Belt delivers carbon removal with agronomic benefits
Terrestrial enhanced weathering (EW) of silicate rocks, such as crushed basalt, on
farmlands is a promising scalable atmospheric carbon dioxide removal (CDR) strategy that …
farmlands is a promising scalable atmospheric carbon dioxide removal (CDR) strategy that …
Exploring and retrieving sequence and metadata for species across the tree of life with NCBI Datasets
To explore complex biological questions, it is often necessary to access various data types
from public data repositories. As the volume and complexity of biological sequence data …
from public data repositories. As the volume and complexity of biological sequence data …
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023
J Alvarez-Jarreta, B Amos, C Aurrecoechea… - Nucleic acids …, 2024 - academic.oup.com
Abstract The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB,
https://veupathdb. org) is a Bioinformatics Resource Center funded by the National Institutes …
https://veupathdb. org) is a Bioinformatics Resource Center funded by the National Institutes …
Polycomb repression of Hox genes involves spatial feedback but not domain compaction or phase transition
Polycomb group proteins have a critical role in silencing transcription during development. It
is commonly proposed that Polycomb-dependent changes in genome folding, which …
is commonly proposed that Polycomb-dependent changes in genome folding, which …
Kunitz-type protease inhibitor TFPI2 remodels stemness and immunosuppressive tumor microenvironment in glioblastoma
Glioblastoma (GBM) tumors consist of multiple cell populations, including self-renewing
glioblastoma stem cells (GSCs) and immunosuppressive microglia. Here we identified …
glioblastoma stem cells (GSCs) and immunosuppressive microglia. Here we identified …
Bacterial cGAS senses a viral RNA to initiate immunity
Cyclic oligonucleotide-based antiphage signalling systems (CBASS) protect prokaryotes
from viral (phage) attack through the production of cyclic oligonucleotides, which activate …
from viral (phage) attack through the production of cyclic oligonucleotides, which activate …