Going viral: next-generation sequencing applied to phage populations in the human gut
Over the past decade, researchers have begun to characterize viral diversity using
metagenomic methods. These studies have shown that viruses, the majority of which infect …
metagenomic methods. These studies have shown that viruses, the majority of which infect …
Transkingdom control of viral infection and immunity in the mammalian intestine
JK Pfeiffer, HW Virgin - Science, 2016 - science.org
BACKGROUND Viruses that infect the mammalian gastrointestinal tract have intimate
relationships with the host, as well as members of the complex community of microbes that …
relationships with the host, as well as members of the complex community of microbes that …
Wastewater-based epidemiology for early detection of viral outbreaks
The immense global burden of infectious disease outbreaks and the need to establish
prediction and prevention systems have been recognized by the World Health Organization …
prediction and prevention systems have been recognized by the World Health Organization …
Studying vertical microbiome transmission from mothers to infants by strain-level metagenomic profiling
The gut microbiome becomes shaped in the first days of life and continues to increase its
diversity during the first months. Links between the configuration of the infant gut microbiome …
diversity during the first months. Links between the configuration of the infant gut microbiome …
Discovery of several thousand highly diverse circular DNA viruses
MJ Tisza, DV Pastrana, NL Welch, B Stewart, A Peretti… - elife, 2020 - elifesciences.org
Although millions of distinct virus species likely exist, only approximately 9000 are
catalogued in GenBank's RefSeq database. We selectively enriched for the genomes of …
catalogued in GenBank's RefSeq database. We selectively enriched for the genomes of …
Human skin microbiota: high diversity of DNA viruses identified on the human skin by high throughput sequencing
V Foulongne, V Sauvage, C Hebert, O Dereure… - PloS one, 2012 - journals.plos.org
The human skin is a complex ecosystem that hosts a heterogeneous flora. Until recently, the
diversity of the cutaneous microbiota was mainly investigated for bacteria through culture …
diversity of the cutaneous microbiota was mainly investigated for bacteria through culture …
Studying the gut virome in the metagenomic era: challenges and perspectives
The human gut harbors a complex ecosystem of microorganisms, including bacteria and
viruses. With the rise of next-generation sequencing technologies, we have seen a quantum …
viruses. With the rise of next-generation sequencing technologies, we have seen a quantum …
Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research
Phylogenetic analyses have prompted a taxonomic reorganization of family Partitiviridae
(encapsidated, bisegmented dsRNA viruses that infect plants, fungi, or protozoa), the focus …
(encapsidated, bisegmented dsRNA viruses that infect plants, fungi, or protozoa), the focus …
[HTML][HTML] Resident viruses and their interactions with the immune system
BA Duerkop, LV Hooper - Nature immunology, 2013 - nature.com
The human body is colonized with a diverse resident microflora that includes viruses.
Recent studies of metagenomes have begun to characterize the composition of the …
Recent studies of metagenomes have begun to characterize the composition of the …
[HTML][HTML] Safety analysis of a Russian phage cocktail: from metagenomic analysis to oral application in healthy human subjects
Phage therapy has a long tradition in Eastern Europe, where preparations are comprised of
complex phage cocktails whose compositions have not been described. We investigated the …
complex phage cocktails whose compositions have not been described. We investigated the …