Life and death in the soil microbiome: how ecological processes influence biogeochemistry

NW Sokol, E Slessarev, GL Marschmann… - Nature Reviews …, 2022 - nature.com
Soil microorganisms shape global element cycles in life and death. Living soil
microorganisms are a major engine of terrestrial biogeochemistry, driving the turnover of soil …

Plant growth-promoting rhizobacteria for sustainable agricultural production

LA de Andrade, CHB Santos, ET Frezarin, LR Sales… - Microorganisms, 2023 - mdpi.com
Rhizosheric bacteria with several abilities related to plant growth and health have been
denominated Plant Growth-Promoting Rhizobacteria (PGPR). PGPR promote plant growth …

Rhizosphere bacteriome structure and functions

N Ling, T Wang, Y Kuzyakov - Nature communications, 2022 - nature.com
Microbial composition and functions in the rhizosphere—an important microbial hotspot—
are among the most fascinating yet elusive topics in microbial ecology. We used 557 pairs of …

Deciphering the role of specialist and generalist plant–microbial interactions as drivers of plant–soil feedback

M Semchenko, KE Barry, FT de Vries… - New …, 2022 - Wiley Online Library
Feedback between plants and soil microbial communities can be a powerful driver of
vegetation dynamics. Plants elicit changes in the soil microbiome that either promote or …

Conserved and reproducible bacterial communities associate with extraradical hyphae of arbuscular mycorrhizal fungi

BD Emmett, V Lévesque-Tremblay… - The ISME …, 2021 - academic.oup.com
Extraradical hyphae (ERH) of arbuscular mycorrhizal fungi (AMF) extend from plant roots
into the soil environment and interact with soil microbial communities. Evidence of positive …

Nutrient and moisture limitations reveal keystone metabolites linking rhizosphere metabolomes and microbiomes

NR Baker, K Zhalnina, M Yuan, D Herman… - Proceedings of the …, 2024 - pnas.org
Plants release a wealth of metabolites into the rhizosphere that can shape the composition
and activity of microbial communities in response to environmental stress. The connection …

[HTML][HTML] Microbes to support plant health: understanding bioinoculant success in complex conditions

SWM Poppeliers, JJ Sánchez-Gil… - Current opinion in …, 2023 - Elsevier
A promising, sustainable way to enhance plant health and productivity is by leveraging
beneficial microbes. Beneficial microbes are natural soil residents with proven benefits for …

Viral but not bacterial community successional patterns reflect extreme turnover shortly after rewetting dry soils

C Santos-Medellín, SJ Blazewicz… - Nature Ecology & …, 2023 - nature.com
As central members of soil trophic networks, viruses have the potential to drive substantial
microbial mortality and nutrient turnover. Pinpointing viral contributions to terrestrial …

Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil

EP Starr, EE Nuccio, J Pett-Ridge… - Proceedings of the …, 2019 - National Acad Sciences
Viruses impact nearly all organisms on Earth, with ripples of influence in agriculture, health,
and biogeochemical processes. However, very little is known about RNA viruses in an …

HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi

EE Nuccio, SJ Blazewicz, M Lafler, AN Campbell… - Microbiome, 2022 - Springer
Background Linking the identity of wild microbes with their ecophysiological traits and
environmental functions is a key ambition for microbial ecologists. Of many techniques that …