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Whole‐genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations
Whole‐genome resequencing (WGR) is a powerful method for addressing fundamental
evolutionary biology questions that have not been fully resolved using traditional methods …
evolutionary biology questions that have not been fully resolved using traditional methods …
Sequencing pools of individuals—mining genome-wide polymorphism data without big funding
The analysis of polymorphism data is becoming increasingly important as a complementary
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs …
tool to classical genetic analyses. Nevertheless, despite plunging sequencing costs …
Direct observation of adaptive tracking on ecological time scales in Drosophila
Direct observation of evolution in response to natural environmental change can resolve
fundamental questions about adaptation, including its pace, temporal dynamics, and …
fundamental questions about adaptation, including its pace, temporal dynamics, and …
Oak genome reveals facets of long lifespan
Oaks are an important part of our natural and cultural heritage. Not only are they ubiquitous
in our most common landscapes but they have also supplied human societies with …
in our most common landscapes but they have also supplied human societies with …
Stacks: an analysis tool set for population genomics
Massively parallel short‐read sequencing technologies, coupled with powerful software
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …
platforms, are enabling investigators to analyse tens of thousands of genetic markers. This …
A rhesus macaque model of Asian-lineage Zika virus infection
DM Dudley, MT Aliota, EL Mohr, AM Weiler… - Nature …, 2016 - nature.com
Abstract Infection with Asian-lineage Zika virus (ZIKV) has been associated with Guillain–
Barré syndrome and fetal abnormalities, but the underlying mechanisms remain poorly …
Barré syndrome and fetal abnormalities, but the underlying mechanisms remain poorly …
Genome-wide genetic marker discovery and genoty** using next-generation sequencing
The advent of next-generation sequencing (NGS) has revolutionized genomic and
transcriptomic approaches to biology. These new sequencing tools are also valuable for the …
transcriptomic approaches to biology. These new sequencing tools are also valuable for the …
Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri
Background Microsatellite markers are widely used for estimating genetic diversity within
and differentiation among populations. However, it has rarely been tested whether such …
and differentiation among populations. However, it has rarely been tested whether such …
PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
Sequencing pooled DNA samples (Pool-Seq) is the most cost-effective approach for the
genome-wide comparison of population samples. Here, we introduce PoPoolation2, the first …
genome-wide comparison of population samples. Here, we introduce PoPoolation2, the first …
Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares
Snowshoe hares (Lepus americanus) maintain seasonal camouflage by molting to a white
winter coat, but some hares remain brown during the winter in regions with low snow cover …
winter coat, but some hares remain brown during the winter in regions with low snow cover …