Partial least squares: a versatile tool for the analysis of high-dimensional genomic data

AL Boulesteix, K Strimmer - Briefings in bioinformatics, 2007 - academic.oup.com
Partial least squares (PLS) is an efficient statistical regression technique that is highly suited
for the analysis of genomic and proteomic data. In this article, we review both the theory …

Clustering algorithms in biomedical research: a review

R Xu, DC Wunsch - IEEE reviews in biomedical engineering, 2010 - ieeexplore.ieee.org
Applications of clustering algorithms in biomedical research are ubiquitous, with typical
examples including gene expression data analysis, genomic sequence analysis, biomedical …

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

KA Lê Cao, S Boitard, P Besse - BMC bioinformatics, 2011 - Springer
Background Variable selection on high throughput biological data, such as gene expression
or single nucleotide polymorphisms (SNPs), becomes inevitable to select relevant …

Histology image analysis for carcinoma detection and grading

L He, LR Long, S Antani, GR Thoma - Computer methods and programs in …, 2012 - Elsevier
This paper presents an overview of the image analysis techniques in the domain of
histopathology, specifically, for the objective of automated carcinoma detection and …

[PDF][PDF] Cutoff threshold of variable importance in projection for variable selection

N Akarachantachote, S Chadcham… - Int J Pure Appl …, 2014 - researchgate.net
At present, variable selection turns to prominence since it obviously alleviate a trouble of
measuring multiple variables per sample. The partial least squares regression (PLS-R) and …

Penalized feature selection and classification in bioinformatics

S Ma, J Huang - Briefings in bioinformatics, 2008 - academic.oup.com
In bioinformatics studies, supervised classification with high-dimensional input variables is
frequently encountered. Examples routinely arise in genomic, epigenetic and proteomic …

Distinctive microRNA profiles relating to patient survival in esophageal squamous cell carcinoma

Y Guo, Z Chen, L Zhang, F Zhou, S Shi, X Feng… - Cancer …, 2008 - aacrjournals.org
Esophageal cancer is the sixth leading cause of death from cancer and one of the least
studied cancers worldwide. The global microRNA expression profile of esophageal cancer …

Characteristics and predictive value of blood transcriptome signature in males with autism spectrum disorders

SW Kong, CD Collins, Y Shimizu-Motohashi, IA Holm… - PloS one, 2012 - journals.plos.org
Autism Spectrum Disorders (ASD) is a spectrum of highly heritable neurodevelopmental
disorders in which known mutations contribute to disease risk in 20% of cases. Here, we …

Approaches to dimensionality reduction in proteomic biomarker studies

M Hilario, A Kalousis - Briefings in bioinformatics, 2008 - academic.oup.com
Mass-spectra based proteomic profiles have received widespread attention as potential
tools for biomarker discovery and early disease diagnosis. A major data-analytical problem …

[HTML][HTML] PCA based feature extraction and MPSO based feature selection for gene expression microarray medical data classification

A Razzaque, A Badholia - Measurement: sensors, 2024 - Elsevier
In this paper, a novel Multi Class based Feature Extraction (MC-FE) method has been
proposed for medical data classification. Genomic datasets, or gene expression-based …