Phylogenetic tree building in the genomic age
Knowing phylogenetic relationships among species is fundamental for many studies in
biology. An accurate phylogenetic tree underpins our understanding of the major transitions …
biology. An accurate phylogenetic tree underpins our understanding of the major transitions …
Prevalence and adaptive impact of introgression
Alleles that introgress between species can influence the evolutionary and ecological fate of
species exposed to novel environments. Hybrid offspring of different species are often unfit …
species exposed to novel environments. Hybrid offspring of different species are often unfit …
Widespread introgression across a phylogeny of 155 Drosophila genomes
Genome-scale sequence data have invigorated the study of hybridization and introgression,
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …
particularly in animals. However, outside of a few notable cases, we lack systematic tests for …
Phylogenomic approaches to detecting and characterizing introgression
Phylogenomics has revealed the remarkable frequency with which introgression occurs
across the tree of life. These discoveries have been enabled by the rapid growth of methods …
across the tree of life. These discoveries have been enabled by the rapid growth of methods …
Efficient Bayesian inference under the multispecies coalescent with migration
T Flouri, X Jiao, J Huang… - Proceedings of the …, 2023 - National Acad Sciences
Analyses of genome sequence data have revealed pervasive interspecific gene flow and
enriched our understanding of the role of gene flow in speciation and adaptation. Inference …
enriched our understanding of the role of gene flow in speciation and adaptation. Inference …
The evolution of insect biodiversity
Insects comprise over half of all described animal species. Together with the Protura
(coneheads), Collembola (springtails) and Diplura (two-pronged bristletails), insects form …
(coneheads), Collembola (springtails) and Diplura (two-pronged bristletails), insects form …
Multispecies coalescent: theory and applications in phylogenetics
Species tree estimation is a basic part of many biological research projects, ranging from
answering basic evolutionary questions (eg, how did a group of species adapt to their …
answering basic evolutionary questions (eg, how did a group of species adapt to their …
Species delimitation
Species delimitation is the process of determining which groups of individual organisms
constitute different populations of a single species and which constitute different species …
constitute different populations of a single species and which constitute different species …
Estimation of species divergence times in presence of cross-species gene flow
Cross-species introgression can have significant impacts on phylogenomic reconstruction of
species divergence events. Here, we used simulations to show how the presence of even a …
species divergence events. Here, we used simulations to show how the presence of even a …
Power of Bayesian and Heuristic Tests to Detect Cross-Species Introgression with Reference to Gene Flow in the Tamias quadrivittatus Group of North American …
In the past two decades, genomic data have been widely used to detect historical gene flow
between species in a variety of plants and animals. The Tamias quadrivittatus group of North …
between species in a variety of plants and animals. The Tamias quadrivittatus group of North …