Applications for next-generation sequencing in fish ecotoxicogenomics

AC Mehinto, CJ Martyniuk, DJ Spade… - Frontiers in …, 2012‏ - frontiersin.org
The new technologies for next-generation sequencing (NGS) and global gene expression
analyses that are widely used in molecular medicine are increasingly applied to the field of …

New microbial resource: microbial diversity, function and dynamics in Chinese liquor starter

Y Huang, Z Yi, Y **, Y Zhao, K He, D Liu, D Zhao… - Scientific Reports, 2017‏ - nature.com
Abstract Traditional Chinese liquor (Baijiu) solid state fermentation technology has lasted for
several thousand years. The microbial communities that enrich in liquor starter are important …

Mitochondrial genome structures and phylogenetic analyses of two tropical characidae fishes

CH Sun, HY Liu, N Xu, XL Zhang, Q Zhang… - Frontiers in …, 2021‏ - frontiersin.org
The Characidae family contains the largest number of tropical fish species. Morphological
similarities make species identification difficult within this family. Here, the complete …

Integrated shotgun sequencing and bioinformatics pipeline allows ultra-fast mitogenome recovery and confirms substantial gene rearrangements in Australian …

HM Gan, MB Schultz, CM Austin - BMC Evolutionary Biology, 2014‏ - Springer
Background Although it is possible to recover the complete mitogenome directly from
shotgun sequencing data, currently reported methods and pipelines are still relatively time …

Integrative taxonomy supports new candidate fish species in a poorly studied neotropical region: the Jequitinhonha River Basin

ML Pugedo, FR de Andrade Neto, TC Pessali… - Genetica, 2016‏ - Springer
Molecular identification through DNA barcoding has been proposed as a way to standardize
a global biodiversity identification system using a partial sequence of the mitochondrial COI …

The role of continental shelf width in determining freshwater phylogeographic patterns in south‐eastern A ustralian pygmy perches (T eleostei: P ercichthyidae)

PJ Unmack, MP Hammer, M Adams… - Molecular …, 2013‏ - Wiley Online Library
Biogeographic patterns displayed by obligate freshwater organisms are intimately related to
the nature and extent of connectivity between suitable habitats. Two of the more significant …

[HTML][HTML] The South American and Australian percichthyids and perciliids. What is new about them?

G Arratia, C Quezada-Romegialli - Neotropical Ichthyology, 2019‏ - SciELO Brasil
ABSTRACT A study including morphological characters and mitogenomics of South
American and Australian fishes previously assigned to Percichthyidae was conducted …

Addressing the complex phylogenetic relationship of the Gempylidae fishes using mitogenome data

S Mthethwa, AE Bester‐van der Merwe… - Ecology and …, 2023‏ - Wiley Online Library
The Gempylidae (snake mackerels) family, belonging to the order Perciformes, consists of
about 24 species described in 16 genera primarily distributed in tropical, subtropical, and …

A comprehensive study on the mitochondrial genome of Volva habei and exploring phylogenetic relationships in Littorinimorpha

X Liang, J Li, Y Ye - Scientific Reports, 2024‏ - nature.com
In order to enrich our taxonomic and systematic comprehension of Ovulidae within the
evolutionary framework of Littorinimorpha. we present a comprehensive analysis of the …

Characterisation of the complete mitochondrial genome and 13 microsatellite loci through next-generation sequencing for the New Caledonian spider-ant …

M Berman, CM Austin, AD Miller - Molecular biology reports, 2014‏ - Springer
The complete mitochondrial genome and a set of polymorphic microsatellite markers were
identified by 454 pyrosequencing (1/16th of a plate) for the New Caledonian rainforest …