OptM: estimating the optimal number of migration edges on population trees using Treemix

RR Fitak - Biology Methods and Protocols, 2021 - academic.oup.com
The software Treemix has become extensively used to estimate the number of migration
events, or edges (m), on population trees from genome-wide allele frequency data …

The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem

SJ Puechmaille - Molecular ecology resources, 2016 - Wiley Online Library
Inferences of population structure and more precisely the identification of genetically
homogeneous groups of individuals are essential to the fields of ecology, evolutionary …

Population genomics and the statistical values of race: an interdisciplinary perspective on the biological classification of human populations and implications for …

KN Maglo, TB Mersha, LJ Martin - Frontiers in Genetics, 2016 - frontiersin.org
The biological status and biomedical significance of the concept of race as applied to
humans continue to be contentious issues despite the use of advanced statistical and …

Fast model-based estimation of ancestry in unrelated individuals

DH Alexander, J Novembre, K Lange - Genome research, 2009 - genome.cshlp.org
Population stratification has long been recognized as a confounding factor in genetic
association studies. Estimated ancestries, derived from multi-locus genotype data, can be …

Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape

F Emanuelli, S Lorenzi, L Grzeskowiak, V Catalano… - BMC plant biology, 2013 - Springer
Background The economic importance of grapevine has driven significant efforts in
genomics to accelerate the exploitation of Vitis resources for development of new cultivars …

Is infinity that far? A Bayesian nonparametric perspective of finite mixture models

R Argiento, M De Iorio - The Annals of Statistics, 2022 - projecteuclid.org
Is infinity that far? A Bayesian nonparametric perspective of finite mixture models Page 1 The
Annals of Statistics 2022, Vol. 50, No. 5, 2641–2663 https://doi.org/10.1214/22-AOS2201 © …

Distribution of SUN, OVATE, LC, and FAS in the Tomato Germplasm and the Relationship to Fruit Shape Diversity

GR Rodríguez, S Muños, C Anderson, SC Sim… - Plant …, 2011 - academic.oup.com
Phenotypic diversity within cultivated tomato (Solanum lycopersicum) is particularly evident
for fruit shape and size. Four genes that control tomato fruit shape have been cloned. SUN …

Whole-genome analysis of giraffe supports four distinct species

RTF Coimbra, S Winter, V Kumar, KP Koepfli… - Current Biology, 2021 - cell.com
Species is the fundamental taxonomic unit in biology and its delimitation has implications for
conservation. In giraffe (Giraffa spp.), multiple taxonomic classifications have been proposed …

Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program structure

KJ Gilbert, RL Andrew, DG Bock, MT Franklin… - Molecular …, 2012 - Wiley Online Library
Reproducibility is the benchmark for results and conclusions drawn from scientific studies,
but systematic studies on the reproducibility of scientific results are surprisingly rare …

Multilocus Species Delimitation in a Complex of Morphologically Conserved Trapdoor Spiders (Mygalomorphae, Antrodiaetidae, Aliatypus)

JD Satler, BC Carstens, M Hedin - Systematic biology, 2013 - academic.oup.com
Species are a fundamental unit for biological studies, yet no uniform guidelines exist for
determining species limits in an objective manner. Given the large number of species …