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OptM: estimating the optimal number of migration edges on population trees using Treemix
RR Fitak - Biology Methods and Protocols, 2021 - academic.oup.com
The software Treemix has become extensively used to estimate the number of migration
events, or edges (m), on population trees from genome-wide allele frequency data …
events, or edges (m), on population trees from genome-wide allele frequency data …
The program structure does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem
SJ Puechmaille - Molecular ecology resources, 2016 - Wiley Online Library
Inferences of population structure and more precisely the identification of genetically
homogeneous groups of individuals are essential to the fields of ecology, evolutionary …
homogeneous groups of individuals are essential to the fields of ecology, evolutionary …
Population genomics and the statistical values of race: an interdisciplinary perspective on the biological classification of human populations and implications for …
KN Maglo, TB Mersha, LJ Martin - Frontiers in Genetics, 2016 - frontiersin.org
The biological status and biomedical significance of the concept of race as applied to
humans continue to be contentious issues despite the use of advanced statistical and …
humans continue to be contentious issues despite the use of advanced statistical and …
Fast model-based estimation of ancestry in unrelated individuals
Population stratification has long been recognized as a confounding factor in genetic
association studies. Estimated ancestries, derived from multi-locus genotype data, can be …
association studies. Estimated ancestries, derived from multi-locus genotype data, can be …
Genetic diversity and population structure assessed by SSR and SNP markers in a large germplasm collection of grape
F Emanuelli, S Lorenzi, L Grzeskowiak, V Catalano… - BMC plant biology, 2013 - Springer
Background The economic importance of grapevine has driven significant efforts in
genomics to accelerate the exploitation of Vitis resources for development of new cultivars …
genomics to accelerate the exploitation of Vitis resources for development of new cultivars …
Is infinity that far? A Bayesian nonparametric perspective of finite mixture models
Is infinity that far? A Bayesian nonparametric perspective of finite mixture models Page 1 The
Annals of Statistics 2022, Vol. 50, No. 5, 2641–2663 https://doi.org/10.1214/22-AOS2201 © …
Annals of Statistics 2022, Vol. 50, No. 5, 2641–2663 https://doi.org/10.1214/22-AOS2201 © …
Distribution of SUN, OVATE, LC, and FAS in the Tomato Germplasm and the Relationship to Fruit Shape Diversity
Phenotypic diversity within cultivated tomato (Solanum lycopersicum) is particularly evident
for fruit shape and size. Four genes that control tomato fruit shape have been cloned. SUN …
for fruit shape and size. Four genes that control tomato fruit shape have been cloned. SUN …
Whole-genome analysis of giraffe supports four distinct species
Species is the fundamental taxonomic unit in biology and its delimitation has implications for
conservation. In giraffe (Giraffa spp.), multiple taxonomic classifications have been proposed …
conservation. In giraffe (Giraffa spp.), multiple taxonomic classifications have been proposed …
Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program structure
Reproducibility is the benchmark for results and conclusions drawn from scientific studies,
but systematic studies on the reproducibility of scientific results are surprisingly rare …
but systematic studies on the reproducibility of scientific results are surprisingly rare …
Multilocus Species Delimitation in a Complex of Morphologically Conserved Trapdoor Spiders (Mygalomorphae, Antrodiaetidae, Aliatypus)
Species are a fundamental unit for biological studies, yet no uniform guidelines exist for
determining species limits in an objective manner. Given the large number of species …
determining species limits in an objective manner. Given the large number of species …