Methods of studying soil microbial diversity

JL Kirk, LA Beaudette, M Hart, P Moutoglis… - Journal of …, 2004 - Elsevier
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Methods for measuring denitrification: diverse approaches to a difficult problem

PM Groffman, MA Altabet, JK Böhlke… - Ecological …, 2006 - Wiley Online Library
Denitrification, the reduction of the nitrogen (N) oxides, nitrate (NO3−) and nitrite (NO2−), to
the gases nitric oxide (NO), nitrous oxide (N2O), and dinitrogen (N2), is important to primary …

Diversity and distribution of coral-associated bacteria

F Rohwer, V Seguritan, F Azam… - Marine Ecology Progress …, 2002 - int-res.com
Coral reefs are the most biodiverse of all marine ecosystems; however, very little is known
about prokaryotic diversity in these systems. To address this issue, we sequenced over 1000 …

Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil

C Rösch, A Mergel, H Bothe - Applied and environmental …, 2002 - journals.asm.org
Isolated soil DNA from an oak-hornbeam forest close to Cologne, Germany, was suitable for
PCR amplification of gene segments coding for the 16S rRNA and nitrogenase reductase …

The molecular revolution in ectomycorrhizal ecology: peeking into the black‐box

TR Horton, TD Bruns - Molecular ecology, 2001 - Wiley Online Library
Molecular tools have now been applied for the past 5 years to dissect ectomycorrhizal (EM)
community structure, and they have propelled a resurgence in interest in the field. Results …

Pesticide effects on bacterial diversity in agricultural soils–a review

K Johnsen, CS Jacobsen, V Torsvik… - Biology and Fertility of …, 2001 - Springer
According to guidelines for the approval of pesticides, side-effects on soil microorganisms
should be determined by studying functional parameters such as carbon or nitrogen …

[LLIBRE][B] Enzymes in the environment: activity, ecology, and applications

RG Burns, RP Dick - 2002 - taylorfrancis.com
Exploring the role of enzymes in biogeochemical processes, this reference explores the
function, molecular biology, and biochemistry of microorganisms and their intra-and extra …

Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other …

B Dı́ez, C Pedrós-Alió, TL Marsh… - Applied and …, 2001 - journals.asm.org
We used denaturing gradient gel electrophoresis (DGGE) to study the diversity of
picoeukaryotes in natural marine assemblages. Two eukaryote-specific primer sets targeting …

Genotypic microbial community profiling: a critical technical review

A Nocker, M Burr, AK Camper - Microbial ecology, 2007 - Springer
Microbial ecology has undergone a profound change in the last two decades with regard to
methods employed for the analysis of natural communities. Emphasis has shifted from …

Bacterial community composition in Brazilian Anthrosols and adjacent soils characterized using culturing and molecular identification

B O'neill, J Grossman, MT Tsai, JE Gomes, J Lehmann… - Microbial ecology, 2009 - Springer
Microbial community composition was examined in two soil types, Anthrosols and adjacent
soils, sampled from three locations in the Brazilian Amazon. The Anthrosols, also known as …