Diffusion models in bioinformatics and computational biology

Z Guo, J Liu, Y Wang, M Chen, D Wang, D Xu… - Nature reviews …, 2024 - nature.com
Denoising diffusion models embody a type of generative artificial intelligence that can be
applied in computer vision, natural language processing and bioinformatics. In this Review …

Machine learning for precision medicine

SJ MacEachern, ND Forkert - Genome, 2021 - cdnsciencepub.com
Precision medicine is an emerging approach to clinical research and patient care that
focuses on understanding and treating disease by integrating multi-modal or multi-omics …

SBSM-Pro: support bio-sequence machine for proteins

Y Wang, Y Zhai, Y Ding, Q Zou - Science China Information Sciences, 2024 - Springer
Proteins play a pivotal role in biological systems. The use of machine learning algorithms for
protein classification can assist and even guide biological experiments, offering crucial …

Opportunities and obstacles for deep learning in biology and medicine

T Ching, DS Himmelstein… - Journal of the …, 2018 - royalsocietypublishing.org
Deep learning describes a class of machine learning algorithms that are capable of
combining raw inputs into layers of intermediate features. These algorithms have recently …

A review of deep learning applications in human genomics using next-generation sequencing data

WS Alharbi, M Rashid - Human Genomics, 2022 - Springer
Genomics is advancing towards data-driven science. Through the advent of high-throughput
data generating technologies in human genomics, we are overwhelmed with the heap of …

Machine learning meets omics: applications and perspectives

R Li, L Li, Y Xu, J Yang - Briefings in Bioinformatics, 2022 - academic.oup.com
The innovation of biotechnologies has allowed the accumulation of omics data at an
alarming rate, thus introducing the era of 'big data'. Extracting inherent valuable knowledge …

[HTML][HTML] Methods for ChIP-seq analysis: a practical workflow and advanced applications

R Nakato, T Sakata - Methods, 2021 - Elsevier
Chromatin immunoprecipitation followed by sequencing (ChIP-seq) is a central method in
epigenomic research. Genome-wide analysis of histone modifications, such as enhancer …

Recent advances of deep learning in bioinformatics and computational biology

B Tang, Z Pan, K Yin, A Khateeb - Frontiers in genetics, 2019 - frontiersin.org
Extracting inherent valuable knowledge from omics big data remains as a daunting problem
in bioinformatics and computational biology. Deep learning, as an emerging branch from …

Intelligent health care: Applications of deep learning in computational medicine

S Yang, F Zhu, X Ling, Q Liu, P Zhao - Frontiers in Genetics, 2021 - frontiersin.org
With the progress of medical technology, biomedical field ushered in the era of big data,
based on which and driven by artificial intelligence technology, computational medicine has …

DeepInsight: A methodology to transform a non-image data to an image for convolution neural network architecture

A Sharma, E Vans, D Shigemizu, KA Boroevich… - Scientific reports, 2019 - nature.com
It is critical, but difficult, to catch the small variation in genomic or other kinds of data that
differentiates phenotypes or categories. A plethora of data is available, but the information …