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Horizontal gene transfer and adaptive evolution in bacteria
Horizontal gene transfer (HGT) is arguably the most conspicuous feature of bacterial
evolution. Evidence for HGT is found in most bacterial genomes. Although HGT can …
evolution. Evidence for HGT is found in most bacterial genomes. Although HGT can …
Diversity within species: interpreting strains in microbiomes
Studying within-species variation has traditionally been limited to culturable bacterial
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …
[HTML][HTML] Elevated rates of horizontal gene transfer in the industrialized human microbiome
Industrialization has impacted the human gut ecosystem, resulting in altered microbiome
composition and diversity. Whether bacterial genomes may also adapt to the …
composition and diversity. Whether bacterial genomes may also adapt to the …
Ecology and evolution of metabolic cross-feeding interactions in bacteria
Literature covered: early 2000s to late 2017 Bacteria frequently exchange metabolites with
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …
other micro-and macro-organisms. In these often obligate cross-feeding interactions, primary …
The ecology and evolution of pangenomes
Since the first genome-scale comparisons, it has been evident that the genomes of many
species are unbound by strict vertical descent: Large differences in gene content can occur …
species are unbound by strict vertical descent: Large differences in gene content can occur …
Genetic drift, selection and the evolution of the mutation rate
As one of the few cellular traits that can be quantified across the tree of life, DNA-replication
fidelity provides an excellent platform for understanding fundamental evolutionary …
fidelity provides an excellent platform for understanding fundamental evolutionary …
Evolution by gene loss
The recent increase in genomic data is revealing an unexpected perspective of gene loss as
a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This …
a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This …
Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential
Background Antibacterial biocides and metals can co-select for antibiotic resistance when
bacteria harbour resistance or tolerance genes towards both types of compounds. Despite …
bacteria harbour resistance or tolerance genes towards both types of compounds. Despite …
Evolution of plasmid mobility: origin and fate of conjugative and nonconjugative plasmids
C Coluzzi, MP Garcillán-Barcia… - Molecular Biology …, 2022 - academic.oup.com
Conjugation drives the horizontal transfer of adaptive traits across prokaryotes. One-fourth of
the plasmids encode the functions necessary to conjugate autonomously, the others being …
the plasmids encode the functions necessary to conjugate autonomously, the others being …
The cancer microbiome atlas: a pan-cancer comparative analysis to distinguish tissue-resident microbiota from contaminants
Studying the microbial composition of internal organs and their associations with disease
remains challenging due to the difficulty of acquiring clinical biopsies. We designed a …
remains challenging due to the difficulty of acquiring clinical biopsies. We designed a …