Two decades of Martini: Better beads, broader scope
The Martini model, a coarse‐grained force field for molecular dynamics simulations, has
been around for nearly two decades. Originally developed for lipid‐based systems by the …
been around for nearly two decades. Originally developed for lipid‐based systems by the …
A review of advancements in coarse-grained molecular dynamics simulations
Over the last few years, coarse-grained molecular dynamics has emerged as a way to model
large and complex systems in an efficient and inexpensive manner due to its lowered …
large and complex systems in an efficient and inexpensive manner due to its lowered …
Modeling and simulations of polymers: a roadmap
Molecular modeling and simulations are invaluable tools for the polymer science and
engineering community. These computational approaches enable predictions and provide …
engineering community. These computational approaches enable predictions and provide …
Perspective on the Martini model
The Martini model, a coarse-grained force field for biomolecular simulations, has found a
broad range of applications since its release a decade ago. Based on a building block …
broad range of applications since its release a decade ago. Based on a building block …
Improved parameters for the martini coarse-grained protein force field
DH De Jong, G Singh, WFD Bennett… - Journal of chemical …, 2013 - ACS Publications
The Martini coarse-grained force field has been successfully used for simulating a wide
range of (bio) molecular systems. Recent progress in our ability to test the model against …
range of (bio) molecular systems. Recent progress in our ability to test the model against …
Martini 3 coarse‐grained force field: small molecules
The recent re‐parametrization of the Martini coarse‐grained force field, Martini 3, improved
the accuracy of the model in predicting molecular packing and interactions in molecular …
the accuracy of the model in predicting molecular packing and interactions in molecular …
Pitfalls of the Martini model
The computational and conceptual simplifications realized by coarse-grain (CG) models
make them a ubiquitous tool in the current computational modeling landscape. Building …
make them a ubiquitous tool in the current computational modeling landscape. Building …
Martini coarse-grained force field: extension to DNA
JJ Uusitalo, HI Ingólfsson, P Akhshi… - Journal of chemical …, 2015 - ACS Publications
We systematically parameterized a coarse-grained (CG) model for DNA that is compatible
with the Martini force field. The model maps each nucleotide into six to seven CG beads and …
with the Martini force field. The model maps each nucleotide into six to seven CG beads and …
Polystyrene nanoparticles perturb lipid membranes
Polystyrene is abundant in marine debris. Like most synthetic polymers, it degrades very
slowly, producing smaller and smaller particles easily ingested by wildlife. The presence of …
slowly, producing smaller and smaller particles easily ingested by wildlife. The presence of …
Toward understanding lipid reorganization in RNA lipid nanoparticles in acidic environments
A Garaizar, D Díaz-Oviedo, N Zablowsky… - Proceedings of the …, 2024 - pnas.org
The use of lipid nanoparticles (LNPs) for therapeutic RNA delivery has gained significant
interest, particularly highlighted by recent milestones such as the approval of Onpattro and …
interest, particularly highlighted by recent milestones such as the approval of Onpattro and …