Complexity of the alternative splicing landscape in plants

ASN Reddy, Y Marquez, M Kalyna, A Barta - The Plant Cell, 2013 - academic.oup.com
Alternative splicing (AS) of precursor mRNAs (pre-mRNAs) from multiexon genes allows
organisms to increase their coding potential and regulate gene expression through multiple …

Alternative splicing and protein diversity: plants versus animals

S Chaudhary, W Khokhar, I Jabre, ASN Reddy… - Frontiers in plant …, 2019 - frontiersin.org
Plants, unlike animals, exhibit a very high degree of plasticity in their growth and
development and employ diverse strategies to cope with the variations during diurnal cycles …

The developmental dynamics of the maize leaf transcriptome

P Li, L Ponnala, N Gandotra, L Wang, Y Si, SL Tausta… - Nature …, 2010 - nature.com
We have analyzed the maize leaf transcriptome using Illumina sequencing. We mapped
more than 120 million reads to define gene structure and alternative splicing events and to …

Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling

HS Chung, TF Cooke, CL DePew, LC Patel… - The Plant …, 2010 - Wiley Online Library
Jasmonates (JAs) are fatty acid‐derived signaling compounds that control diverse aspects of
plant growth, development and immunity. The F‐box protein COI1 functions both as a …

Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants

S Chamala, G Feng, C Chavarro… - … in bioengineering and …, 2015 - frontiersin.org
Alternative splicing (AS) plays important roles in many plant functions, but its conservation
across the plant kingdom is not known. We describe a methodology to identify AS events …

A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing

B Wang, M Regulski, E Tseng, A Olson… - Genome …, 2018 - genome.cshlp.org
Maize and sorghum are both important crops with similar overall plant architectures, but they
have key differences, especially in regard to their inflorescences. To better understand these …

Evolution of exon-intron structure and alternative splicing

TE Koralewski, KV Krutovsky - PloS one, 2011 - journals.plos.org
Despite significant advances in high-throughput DNA sequencing, many important species
remain understudied at the genome level. In this study we addressed a question of what can …

Genome-wide identification and characterization of aquaporin gene family in common bean (Phaseolus vulgaris L.)

A Ariani, P Gepts - Molecular genetics and genomics, 2015 - Springer
Plant aquaporins are a large and diverse family of water channel proteins that are essential
for several physiological processes in living organisms. Numerous studies have linked plant …

Polypyrimidine Tract Binding Protein Homologs from Arabidopsis Are Key Regulators of Alternative Splicing with Implications in Fundamental Developmental …

C Rühl, E Stauffer, A Kahles, G Wagner… - The Plant …, 2012 - academic.oup.com
Alternative splicing (AS) generates transcript variants by variable exon/intron definition and
massively expands transcriptome diversity. Changes in AS patterns have been found to be …

Insights into the role of alternative splicing in plant temperature response

V Dikaya, N El Arbi, N Rojas-Murcia… - Journal of …, 2021 - academic.oup.com
Alternative splicing occurs in all eukaryotic organisms. Since the first description of
multiexon genes and the splicing machinery, the field has expanded rapidly, especially in …