Networks and graphs discovery in metabolomics data analysis and interpretation
Both targeted and untargeted mass spectrometry-based metabolomics approaches are used
to understand the metabolic processes taking place in various organisms, from prokaryotes …
to understand the metabolic processes taking place in various organisms, from prokaryotes …
Network-based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation
Introduction Metabolomics has become a crucial part of systems biology; however, data
analysis is still often undertaken in a reductionist way focusing on changes in individual …
analysis is still often undertaken in a reductionist way focusing on changes in individual …
[BOOK][B] The structure of complex networks: theory and applications
E Estrada - 2012 - books.google.com
This book deals with the analysis of the structure of complex networks by combining results
from graph theory, physics, and pattern recognition. The book is divided into two parts. 11 …
from graph theory, physics, and pattern recognition. The book is divided into two parts. 11 …
MetExplore: collaborative edition and exploration of metabolic networks
Metabolism of an organism is composed of hundreds to thousands of interconnected
biochemical reactions responding to environmental or genetic constraints. This metabolic …
biochemical reactions responding to environmental or genetic constraints. This metabolic …
A Laser Dissection-RNAseq Analysis Highlights the Activation of Cytokinin Pathways by Nod Factors in the Medicago truncatula Root Epidermis
MF Jardinaud, S Boivin, N Rodde, O Catrice… - Plant …, 2016 - academic.oup.com
Nod factors (NF s) are lipochitooligosaccharidic signal molecules produced by rhizobia,
which play a key role in the rhizobium-legume symbiotic interaction. In this study, we …
which play a key role in the rhizobium-legume symbiotic interaction. In this study, we …
Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks
J Gao, VG Tarcea, A Karnovsky, BR Mirel… - …, 2010 - academic.oup.com
Metscape is a plug-in for Cytoscape, used to visualize and interpret metabolomic data in the
context of human metabolic networks. We have developed a metabolite database by …
context of human metabolic networks. We have developed a metabolite database by …
Network-based machine learning and graph theory algorithms for precision oncology
Network-based analytics plays an increasingly important role in precision oncology.
Growing evidence in recent studies suggests that cancer can be better understood through …
Growing evidence in recent studies suggests that cancer can be better understood through …
Graphlet-based characterization of directed networks
We are flooded with large-scale, dynamic, directed, networked data. Analyses requiring
exact comparisons between networks are computationally intractable, so new …
exact comparisons between networks are computationally intractable, so new …
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks
High-throughput metabolomic experiments aim at identifying and ultimately quantifying all
metabolites present in biological systems. The metabolites are interconnected through …
metabolites present in biological systems. The metabolites are interconnected through …
A novel bio-inspired approach for high-performance management in service-oriented networks
Service-continuity in distributed computing can be enhanced by designing self-organized
systems, with a non-fixed structure, able to modify their structure and organization, as well as …
systems, with a non-fixed structure, able to modify their structure and organization, as well as …