Uncovering ecological state dynamics with hidden Markov models

BT McClintock, R Langrock, O Gimenez, E Cam… - Ecology …, 2020 - Wiley Online Library
Ecological systems can often be characterised by changes among a finite set of underlying
states pertaining to individuals, populations, communities or entire ecosystems through time …

Telling plant species apart with DNA: from barcodes to genomes

PM Hollingsworth, DZ Li… - … Transactions of the …, 2016 - royalsocietypublishing.org
Land plants underpin a multitude of ecosystem functions, support human livelihoods and
represent a critically important component of terrestrial biodiversity—yet many tens of …

Agricultural intensification and climate change are rapidly decreasing insect biodiversity

PH Raven, DL Wagner - Proceedings of the National …, 2021 - National Acad Sciences
Major declines in insect biomass and diversity, reviewed here, have become obvious and
well documented since the end of World War II. Here, we conclude that the spread and …

ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone

A Srivathsan, L Lee, K Katoh, E Hartop, SN Kutty… - BMC biology, 2021 - Springer
Background DNA barcodes are a useful tool for discovering, understanding, and monitoring
biodiversity which are critical tasks at a time of rapid biodiversity loss. However, widespread …

Convergence of dominance and neglect in flying insect diversity

A Srivathsan, Y Ang, JM Heraty, WS Hwang… - Nature ecology & …, 2023 - nature.com
Most of arthropod biodiversity is unknown to science. Consequently, it has been unclear
whether insect communities around the world are dominated by the same or different taxa …

Quantifying the unquantifiable: why Hymenoptera, not Coleoptera, is the most speciose animal order

AA Forbes, RK Bagley, MA Beer, AC Hippee… - BMC ecology, 2018 - Springer
Background We challenge the oft-repeated claim that the beetles (Coleoptera) are the most
species-rich order of animals. Instead, we assert that another order of insects, the …

A Sequel to Sanger: amplicon sequencing that scales

PDN Hebert, TWA Braukmann, SWJ Prosser… - BMC genomics, 2018 - Springer
Background Although high-throughput sequencers (HTS) have largely displaced their
Sanger counterparts, the short read lengths and high error rates of most platforms constrain …

Environmental DNA metabarcoding of wild flowers reveals diverse communities of terrestrial arthropods

PF Thomsen, EE Sigsgaard - Ecology and evolution, 2019 - Wiley Online Library
Terrestrial arthropods comprise the most species‐rich communities on Earth, and grassland
flowers provide resources for hundreds of thousands of arthropod species. Diverse …

[BOOK][B] Insect biodiversity: science and society

RG Foottit, PH Adler - 2009 - books.google.com
Insect Biodiversity: Science and Society brings together leading scientific experts to assess
the impact insects have on humankind and the earth's fragile ecosystems. It examines why …

[HTML][HTML] The Swedish Malaise trap project: a 15 year retrospective on a countrywide insect inventory

D Karlsson, E Hartop, M Forshage… - Biodiversity data …, 2020 - ncbi.nlm.nih.gov
Abstract The Swedish Malaise Trap Project (SMTP) is one of the most ambitious insect
inventories ever attempted. The project was designed to target poorly known insect groups …