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TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines
TrackMate is an automated tracking software used to analyze bioimages and is distributed
as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to …
as a Fiji plugin. Here, we introduce a new version of TrackMate. TrackMate 7 is built to …
A guide to ERK dynamics, part 1: mechanisms and models
A Ram, D Murphy, N DeCuzzi, M Patankar… - Biochemical …, 2023 - portlandpress.com
Extracellular signal-regulated kinase (ERK) has long been studied as a key driver of both
essential cellular processes and disease. A persistent question has been how this single …
essential cellular processes and disease. A persistent question has been how this single …
ER-directed TREX1 limits cGAS activation at micronuclei
Micronuclei are aberrant nuclear compartments that can form as a result of chromosome mis-
segregation. Frequent loss of micronuclear envelope integrity exposes DNA to the …
segregation. Frequent loss of micronuclear envelope integrity exposes DNA to the …
DNA-functionalized artificial mechanoreceptor for de novo force-responsive signaling
S Yang, M Wang, D Tian, X Zhang, K Cui, S Lü… - Nature Chemical …, 2024 - nature.com
Synthetic signaling receptors enable programmable cellular responses coupling with
customized inputs. However, engineering a designer force-sensing receptor to rewire …
customized inputs. However, engineering a designer force-sensing receptor to rewire …
Intracellular signaling dynamics and their role in coordinating tissue repair
Tissue repair is a complex process that requires effective communication and coordination
between cells across multiple tissues and organ systems. Two of the initial intracellular …
between cells across multiple tissues and organ systems. Two of the initial intracellular …
Transferred mitochondria accumulate reactive oxygen species, promoting proliferation
Recent studies reveal that lateral mitochondrial transfer, the movement of mitochondria from
one cell to another, can affect cellular and tissue homeostasis. Most of what we know about …
one cell to another, can affect cellular and tissue homeostasis. Most of what we know about …
Defined extracellular matrix compositions support stiffness-insensitive cell spreading and adhesion signaling
Integrin-dependent adhesion to the extracellular matrix (ECM) mediates mechanosensing
and signaling in response to altered microenvironmental conditions. In order to provide …
and signaling in response to altered microenvironmental conditions. In order to provide …
Coordination of MAPK and p53 dynamics in the cellular responses to DNA damage and oxidative stress
RL Hanson, E Batchelor - Molecular systems biology, 2022 - embopress.org
In response to different cellular stresses, the transcription factor p53 undergoes different
dynamics. p53 dynamics, in turn, control cell fate. However, distinct stresses can generate …
dynamics. p53 dynamics, in turn, control cell fate. However, distinct stresses can generate …
SHANK3 depletion leads to ERK signalling overdose and cell death in KRAS-mutant cancers
J Lilja, J Kaivola, JRW Conway, J Vuorio… - Nature …, 2024 - nature.com
The KRAS oncogene drives many common and highly fatal malignancies. These include
pancreatic, lung, and colorectal cancer, where various activating KRAS mutations have …
pancreatic, lung, and colorectal cancer, where various activating KRAS mutations have …
[HTML][HTML] Cell-to-cell variability in Myc dynamics drives transcriptional heterogeneity in cancer cells
Cell-to-cell heterogeneity is vital for tumor evolution and survival. How cancer cells achieve
and exploit this heterogeneity remains an active area of research. Here, we identify c-Myc as …
and exploit this heterogeneity remains an active area of research. Here, we identify c-Myc as …