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SBML Level 3: an extensible format for the exchange and reuse of biological models
Abstract Systems biology has experienced dramatic growth in the number, size, and
complexity of computational models. To reproduce simulation results and reuse models …
complexity of computational models. To reproduce simulation results and reuse models …
Computational models for clinical applications in personalized medicine—guidelines and recommendations for data integration and model validation
The future development of personalized medicine depends on a vast exchange of data from
different sources, as well as harmonized integrative analysis of large-scale clinical health …
different sources, as well as harmonized integrative analysis of large-scale clinical health …
A pathway model of glucose-stimulated insulin secretion in the pancreatic β-cell
The pancreas plays a critical role in maintaining glucose homeostasis through the secretion
of hormones from the islets of Langerhans. Glucose-stimulated insulin secretion (GSIS) by …
of hormones from the islets of Langerhans. Glucose-stimulated insulin secretion (GSIS) by …
Data integration in biological research: an overview
Data sharing, integration and annotation are essential to ensure the reproducibility of the
analysis and interpretation of the experimental findings. Often these activities are perceived …
analysis and interpretation of the experimental findings. Often these activities are perceived …
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology
Computational models are often employed in systems biology to study the dynamic
behaviours of complex systems. With the rise in the number of computational models, finding …
behaviours of complex systems. With the rise in the number of computational models, finding …
SBOL visual: a graphical language for genetic designs
Synthetic Biology Open Language (SBOL) Visual is a graphical standard for genetic
engineering. It consists of symbols representing DNA subsequences, including regulatory …
engineering. It consists of symbols representing DNA subsequences, including regulatory …
Harmonizing semantic annotations for computational models in biology
Life science researchers use computational models to articulate and test hypotheses about
the behavior of biological systems. Semantic annotation is a critical component for …
the behavior of biological systems. Semantic annotation is a critical component for …
Microbiome modeling: a beginner's guide
Microbiomes, comprised of diverse microbial species and viruses, play pivotal roles in
human health, environmental processes, and biotechnological applications and interact with …
human health, environmental processes, and biotechnological applications and interact with …
A guide for develo** comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance
As a conceptual model of disease mechanisms, a disease map integrates available
knowledge and is applied for data interpretation, predictions and hypothesis generation. It is …
knowledge and is applied for data interpretation, predictions and hypothesis generation. It is …
Reproducibility in computational neuroscience models and simulations
Objective: Like all scientific research, computational neuroscience research must be
reproducible. Big data science, including simulation research, cannot depend exclusively on …
reproducible. Big data science, including simulation research, cannot depend exclusively on …