New developments on the Encyclopedia of DNA Elements (ENCODE) data portal

Y Luo, BC Hitz, I Gabdank, JA Hilton… - Nucleic acids …, 2020 - academic.oup.com
Abstract The Encyclopedia of DNA Elements (ENCODE) is an ongoing collaborative
research project aimed at identifying all the functional elements in the human and mouse …

The Encyclopedia of DNA elements (ENCODE): data portal update

CA Davis, BC Hitz, CA Sloan, ET Chan… - Nucleic acids …, 2018 - academic.oup.com
The Enc yclopedia of D NA E lements (ENCODE) Data Coordinating Center has developed
the ENCODE Portal database and website as the source for the data and metadata …

The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

SB Reiff, AJ Schroeder, K Kırlı, A Cosolo… - Nature …, 2022 - nature.com
Abstract The 4D Nucleome (4DN) Network aims to elucidate the complex structure and
organization of chromosomes in the nucleus and the impact of their disruption in disease …

The ENCODE uniform analysis pipelines

BC Hitz, L **-Wook, O Jolanki, MS Kagda, K Graham… - Biorxiv, 2023 - pmc.ncbi.nlm.nih.gov
The Encyclopedia of DNA elements (ENCODE) project is a collaborative effort to create a
comprehensive catalog of functional elements in the human genome. The current database …

The road towards data integration in human genomics: players, steps and interactions

A Bernasconi, A Canakoglu… - Briefings in …, 2021 - academic.oup.com
Thousands of new experimental datasets are becoming available every day; in many cases,
they are produced within the scope of large cooperative efforts, involving a variety of …

Laser capture microdissection and RNA-Seq analysis: high sensitivity approaches to explain histopathological heterogeneity in human glioblastoma FFPE archived …

P Civita, S Franceschi, P Aretini, V Ortenzi… - Frontiers in …, 2019 - frontiersin.org
Laser capture microdissection (LCM) coupled with RNA-seq is a powerful tool to identify
genes that are differentially expressed in specific histological tumor subtypes. To better …

Data navigation on the ENCODE portal

MS Kagda, B Lam, C Litton, C Small, CA Sloan… - ar** reparative cellular therapies that evade immune rejection. Existing first …