Advances and selected recent developments in state and parameter estimation
This paper deals with two topics from state and parameter estimation. The first contribution of
this work provides an overview of techniques used for determining which parameters of a …
this work provides an overview of techniques used for determining which parameters of a …
Advances in systems biology modeling: 10 years of crowdsourcing DREAM challenges
Computational and mathematical models are key to obtain a system-level understanding of
biological processes, but their limitations have to be clearly defined to allow their proper …
biological processes, but their limitations have to be clearly defined to allow their proper …
A comparison and catalog of intrinsic tumor growth models
EA Sarapata, LG De Pillis - Bulletin of mathematical biology, 2014 - Springer
Determining the mathematical dynamics and associated parameter values that should be
used to accurately reflect tumor growth continues to be of interest to mathematical modelers …
used to accurately reflect tumor growth continues to be of interest to mathematical modelers …
Analysis of sloppiness in model simulations: Unveiling parameter uncertainty when mathematical models are fitted to data
This work introduces a comprehensive approach to assess the sensitivity of model outputs to
changes in parameter values, constrained by the combination of prior beliefs and data. This …
changes in parameter values, constrained by the combination of prior beliefs and data. This …
Using experimental data and information criteria to guide model selection for reaction–diffusion problems in mathematical biology
Reaction–diffusion models describing the movement, reproduction and death of individuals
within a population are key mathematical modelling tools with widespread applications in …
within a population are key mathematical modelling tools with widespread applications in …
Comprehensive review of models and methods for inferences in bio-chemical reaction networks
The key processes in biological and chemical systems are described by networks of
chemical reactions. From molecular biology to biotechnology applications, computational …
chemical reactions. From molecular biology to biotechnology applications, computational …
Single shot detection of alterations across multiple ionic currents from assimilation of cell membrane dynamics
The dysfunction of ion channels is a causative factor in a variety of neurological diseases,
thereby defining the implicated channels as key drug targets. The detection of functional …
thereby defining the implicated channels as key drug targets. The detection of functional …
Bayesian model comparison and parameter inference in systems biology using nested sampling
N Pullen, RJ Morris - PloS one, 2014 - journals.plos.org
Inferring parameters for models of biological processes is a current challenge in systems
biology, as is the related problem of comparing competing models that explain the data. In …
biology, as is the related problem of comparing competing models that explain the data. In …
Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach
Background Accurate estimation of parameters of biochemical models is required to
characterize the dynamics of molecular processes. This problem is intimately linked to …
characterize the dynamics of molecular processes. This problem is intimately linked to …
Simulating biological processes: stochastic physics from whole cells to colonies
TM Earnest, JA Cole… - Reports on Progress in …, 2018 - iopscience.iop.org
The last few decades have revealed the living cell to be a crowded spatially heterogeneous
space teeming with biomolecules whose concentrations and activities are governed by …
space teeming with biomolecules whose concentrations and activities are governed by …