The current state and future directions of RNAi-based therapeutics

RL Setten, JJ Rossi, S Han - Nature reviews Drug discovery, 2019 - nature.com
The RNA interference (RNAi) pathway regulates mRNA stability and translation in nearly all
human cells. Small double-stranded RNA molecules can efficiently trigger RNAi silencing of …

Nucleic acid-based molecular computation heads towards cellular applications

L Chen, W Chen, G Liu, J Li, C Lu, J Li, W Tan… - Chemical Society …, 2021 - pubs.rsc.org
Nucleic acids, with the advantages of programmability and biocompatibility, have been
widely used to design different kinds of novel biocomputing devices. Recently, nucleic acid …

Multi-arm RNA junctions encoding molecular logic unconstrained by input sequence for versatile cell-free diagnostics

D Ma, Y Li, K Wu, Z Yan, AA Tang… - Nature biomedical …, 2022 - nature.com
Applications of RNA-based molecular logic have been hampered by sequence constraints
imposed on the input and output of the circuits. Here we show that the sequence constraints …

Dynamic self-assembly of compartmentalized DNA nanotubes

S Agarwal, MA Klocke, PE Pungchai… - Nature communications, 2021 - nature.com
Bottom-up synthetic biology aims to engineer artificial cells capable of responsive behaviors
by using a minimal set of molecular components. An important challenge toward this goal is …

DNA Strand Displacement Driven by Host–Guest Interactions

DVDW Kankanamalage, JHT Tran… - Journal of the …, 2022 - ACS Publications
Base-pair-driven toehold-mediated strand displacement (BP-TMSD) is a fundamental
concept employed for constructing DNA machines and networks with a gamut of …

A novel synthetic toehold switch for microRNA detection in mammalian cells

S Wang, NJ Emery, AP Liu - ACS synthetic biology, 2019 - ACS Publications
MicroRNAs (miRNA or miR) are short noncoding RNA of about 21–23 nucleotides that play
critical roles in multiple aspects of biological processes by mediating translational …

Strong sequence–dependence in RNA/DNA hybrid strand displacement kinetics

FG Smith, JP Goertz, K Jurinović, MM Stevens… - Nanoscale, 2024 - pubs.rsc.org
Strand displacement reactions underlie dynamic nucleic acid nanotechnology. The kinetic
and thermodynamic features of DNA-based displacement reactions are well understood and …

Strand displacement strategies for biosensor applications

Y Dai, A Furst, CC Liu - Trends in biotechnology, 2019 - cell.com
DNA has many unique properties beyond encoding genetic information, one of which is its
physicochemical stability based on Watson–Crick base pairing. Differences in sequence …

Dynamic DNA nanostructures in biomedicine: Beauty, utility and limits

A Jahanban-Esfahlan, K Seidi, M Jaymand… - Journal of Controlled …, 2019 - Elsevier
DNA composite materials are at the forefront, especially for biomedical science, as they can
increase the efficacy and safety of current therapies and drug delivery systems. The …

PID and state feedback controllers using DNA strand displacement reactions

NMG Paulino, M Foo, J Kim… - IEEE Control Systems …, 2019 - ieeexplore.ieee.org
Nucleic acid-based chemistry is a strong candidate framework for the construction of future
synthetic biomolecular control circuits. Previous work has demonstrated the capacity of …