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DNA topoisomerases: Advances in understanding of cellular roles and multi‐protein complexes via structure‐function analysis
DNA topoisomerases, capable of manipulating DNA topology, are ubiquitous and
indispensable for cellular survival due to the numerous roles they play during DNA …
indispensable for cellular survival due to the numerous roles they play during DNA …
DNA supercoiling and transcription in bacteria: a two-way street
CJ Dorman - BMC molecular and cell biology, 2019 - Springer
Background The processes of DNA supercoiling and transcription are interdependent
because the movement of a transcription elongation complex simultaneously induces under …
because the movement of a transcription elongation complex simultaneously induces under …
Organization of the Escherichia coli chromosome by a MukBEF axial core
J Mäkelä, DJ Sherratt - Molecular cell, 2020 - cell.com
Structural maintenance of chromosomes (SMC) complexes organize chromosomes
ubiquitously, thereby contributing to their faithful segregation. We demonstrate that under …
ubiquitously, thereby contributing to their faithful segregation. We demonstrate that under …
DNA packaging by molecular motors: from bacteriophage to human chromosomes
Dense packaging of genomic DNA is crucial for organismal survival, as DNA length always
far exceeds the dimensions of the cells that contain it. Organisms, therefore, use …
far exceeds the dimensions of the cells that contain it. Organisms, therefore, use …
Single-organelle quantification reveals stoichiometric and structural variability of carboxysomes dependent on the environment
The carboxysome is a complex, proteinaceous organelle that plays essential roles in carbon
assimilation in cyanobacteria and chemoautotrophs. It comprises hundreds of protein …
assimilation in cyanobacteria and chemoautotrophs. It comprises hundreds of protein …
B cell zone reticular cell microenvironments shape CXCL13 gradient formation
Through the formation of concentration gradients, morphogens drive graded responses to
extracellular signals, thereby fine-tuning cell behaviors in complex tissues. Here we show …
extracellular signals, thereby fine-tuning cell behaviors in complex tissues. Here we show …
Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins
Despite their diverse biochemical characteristics and functions, all DNA-binding proteins
share the ability to accurately locate their target sites among the vast excess of non-target …
share the ability to accurately locate their target sites among the vast excess of non-target …
What makes a type IIA topoisomerase a gyrase or a Topo IV?
J Hirsch, D Klostermeier - Nucleic acids research, 2021 - academic.oup.com
Type IIA topoisomerases catalyze a variety of different reactions: eukaryotic topoisomerase II
relaxes DNA in an ATP-dependent reaction, whereas the bacterial representatives gyrase …
relaxes DNA in an ATP-dependent reaction, whereas the bacterial representatives gyrase …
DNA supercoiling in bacteria: state of play and challenges from a viewpoint of physics based modeling
DNA supercoiling is central to many fundamental processes of living organisms. Its average
level along the chromosome and over time reflects the dynamic equilibrium of opposite …
level along the chromosome and over time reflects the dynamic equilibrium of opposite …
The roles of nucleoid-associated proteins and topoisomerases in chromosome structure, strand segregation, and the generation of phenotypic heterogeneity in …
How to adapt to a changing environment is a fundamental, recurrent problem confronting
cells. One solution is for cells to organize their constituents into a limited number of spatially …
cells. One solution is for cells to organize their constituents into a limited number of spatially …