DNA topoisomerases: Advances in understanding of cellular roles and multi‐protein complexes via structure‐function analysis

SJ McKie, KC Neuman, A Maxwell - Bioessays, 2021 - Wiley Online Library
DNA topoisomerases, capable of manipulating DNA topology, are ubiquitous and
indispensable for cellular survival due to the numerous roles they play during DNA …

DNA supercoiling and transcription in bacteria: a two-way street

CJ Dorman - BMC molecular and cell biology, 2019 - Springer
Background The processes of DNA supercoiling and transcription are interdependent
because the movement of a transcription elongation complex simultaneously induces under …

Organization of the Escherichia coli chromosome by a MukBEF axial core

J Mäkelä, DJ Sherratt - Molecular cell, 2020 - cell.com
Structural maintenance of chromosomes (SMC) complexes organize chromosomes
ubiquitously, thereby contributing to their faithful segregation. We demonstrate that under …

DNA packaging by molecular motors: from bacteriophage to human chromosomes

B Prevo, WC Earnshaw - Nature Reviews Genetics, 2024 - nature.com
Dense packaging of genomic DNA is crucial for organismal survival, as DNA length always
far exceeds the dimensions of the cells that contain it. Organisms, therefore, use …

Single-organelle quantification reveals stoichiometric and structural variability of carboxysomes dependent on the environment

Y Sun, AJM Wollman, F Huang, MC Leake… - The Plant …, 2019 - academic.oup.com
The carboxysome is a complex, proteinaceous organelle that plays essential roles in carbon
assimilation in cyanobacteria and chemoautotrophs. It comprises hundreds of protein …

B cell zone reticular cell microenvironments shape CXCL13 gradient formation

J Cosgrove, M Novkovic, S Albrecht, NB Pikor… - Nature …, 2020 - nature.com
Through the formation of concentration gradients, morphogens drive graded responses to
extracellular signals, thereby fine-tuning cell behaviors in complex tissues. Here we show …

Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins

M Stracy, J Schweizer, DJ Sherratt, AN Kapanidis… - Molecular cell, 2021 - cell.com
Despite their diverse biochemical characteristics and functions, all DNA-binding proteins
share the ability to accurately locate their target sites among the vast excess of non-target …

What makes a type IIA topoisomerase a gyrase or a Topo IV?

J Hirsch, D Klostermeier - Nucleic acids research, 2021 - academic.oup.com
Type IIA topoisomerases catalyze a variety of different reactions: eukaryotic topoisomerase II
relaxes DNA in an ATP-dependent reaction, whereas the bacterial representatives gyrase …

DNA supercoiling in bacteria: state of play and challenges from a viewpoint of physics based modeling

I Junier, E Ghobadpour, O Espeli… - Frontiers in …, 2023 - frontiersin.org
DNA supercoiling is central to many fundamental processes of living organisms. Its average
level along the chromosome and over time reflects the dynamic equilibrium of opposite …

The roles of nucleoid-associated proteins and topoisomerases in chromosome structure, strand segregation, and the generation of phenotypic heterogeneity in …

V Norris, C Kayser, G Muskhelishvili… - FEMS Microbiology …, 2023 - academic.oup.com
How to adapt to a changing environment is a fundamental, recurrent problem confronting
cells. One solution is for cells to organize their constituents into a limited number of spatially …