Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy

M Shintani, ZK Sanchez, K Kimbara - Frontiers in microbiology, 2015 - frontiersin.org
Plasmids are important “vehicles” for the communication of genetic information between
bacteria. The exchange of plasmids transmits pathogenically and environmentally relevant …

Mobility of plasmids

C Smillie, MP Garcillán-Barcia… - Microbiology and …, 2010 - Am Soc Microbiol
Plasmids are key vectors of horizontal gene transfer and essential genetic engineering tools.
They code for genes involved in many aspects of microbial biology, including detoxication …

A compendium of viruses from methanogenic archaea reveals their diversity and adaptations to the gut environment

S Medvedeva, G Borrel, M Krupovic, S Gribaldo - Nature Microbiology, 2023 - nature.com
Methanogenic archaea are major producers of methane, a potent greenhouse gas and
biofuel, and are widespread in diverse environments, including the animal gut. The …

Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements

FJM Mojica, C Díez-Villaseñor… - Journal of molecular …, 2005 - Springer
Prokaryotes contain short DNA repeats known as CRISPR, recognizable by the regular
spacing existing between the recurring units. They represent the most widely distributed …

Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin

A Bolotin, B Quinquis, A Sorokin… - Microbiology, 2005 - microbiologyresearch.org
Numerous prokaryote genomes contain structures known as clustered regularly interspaced
short palindromic repeats (CRISPRs), composed of 25–50 bp repeats separated by unique …

Genomic islands in pathogenic and environmental microorganisms

U Dobrindt, B Hochhut, U Hentschel… - Nature Reviews …, 2004 - nature.com
Horizontal gene transfer is an important mechanism for the evolution of microbial genomes.
Pathogenicity islands—mobile genetic elements that contribute to rapid changes in …

Biological diversity of prokaryotic type IV secretion systems

CE Alvarez-Martinez, PJ Christie - Microbiology and Molecular …, 2009 - Am Soc Microbiol
Type IV secretion systems (T4SS) translocate DNA and protein substrates across prokaryotic
cell envelopes generally by a mechanism requiring direct contact with a target cell. Three …

Conjugative and mobilizable genomic islands in bacteria: evolution and diversity

X Bellanger, S Payot… - FEMS Microbiology …, 2014 - academic.oup.com
Horizontal transfer of genomic islands (GEIs), that is, chromosomal regions encoding
functions that can be advantageous for the host, plays a key role in bacterial evolution, but …

[HTML][HTML] The CRISPR system: small RNA-guided defense in bacteria and archaea

FV Karginov, GJ Hannon - Molecular cell, 2010 - cell.com
All cellular systems evolve ways to combat predators and genomic parasites. In bacteria and
archaea, numerous resistance mechanisms have developed against phage. Our …

The complete genome of the crenarchaeon Sulfolobus solfataricus P2

Q She, RK Singh, F Confalonieri… - Proceedings of the …, 2001 - National Acad Sciences
The genome of the crenarchaeon Sulfolobus solfataricus P2 contains 2,992,245 bp on a
single chromosome and encodes 2,977 proteins and many RNAs. One-third of the encoded …