Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy
M Shintani, ZK Sanchez, K Kimbara - Frontiers in microbiology, 2015 - frontiersin.org
Plasmids are important “vehicles” for the communication of genetic information between
bacteria. The exchange of plasmids transmits pathogenically and environmentally relevant …
bacteria. The exchange of plasmids transmits pathogenically and environmentally relevant …
Mobility of plasmids
Plasmids are key vectors of horizontal gene transfer and essential genetic engineering tools.
They code for genes involved in many aspects of microbial biology, including detoxication …
They code for genes involved in many aspects of microbial biology, including detoxication …
A compendium of viruses from methanogenic archaea reveals their diversity and adaptations to the gut environment
Methanogenic archaea are major producers of methane, a potent greenhouse gas and
biofuel, and are widespread in diverse environments, including the animal gut. The …
biofuel, and are widespread in diverse environments, including the animal gut. The …
Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
Prokaryotes contain short DNA repeats known as CRISPR, recognizable by the regular
spacing existing between the recurring units. They represent the most widely distributed …
spacing existing between the recurring units. They represent the most widely distributed …
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
A Bolotin, B Quinquis, A Sorokin… - Microbiology, 2005 - microbiologyresearch.org
Numerous prokaryote genomes contain structures known as clustered regularly interspaced
short palindromic repeats (CRISPRs), composed of 25–50 bp repeats separated by unique …
short palindromic repeats (CRISPRs), composed of 25–50 bp repeats separated by unique …
Genomic islands in pathogenic and environmental microorganisms
Horizontal gene transfer is an important mechanism for the evolution of microbial genomes.
Pathogenicity islands—mobile genetic elements that contribute to rapid changes in …
Pathogenicity islands—mobile genetic elements that contribute to rapid changes in …
Biological diversity of prokaryotic type IV secretion systems
CE Alvarez-Martinez, PJ Christie - Microbiology and Molecular …, 2009 - Am Soc Microbiol
Type IV secretion systems (T4SS) translocate DNA and protein substrates across prokaryotic
cell envelopes generally by a mechanism requiring direct contact with a target cell. Three …
cell envelopes generally by a mechanism requiring direct contact with a target cell. Three …
Conjugative and mobilizable genomic islands in bacteria: evolution and diversity
Horizontal transfer of genomic islands (GEIs), that is, chromosomal regions encoding
functions that can be advantageous for the host, plays a key role in bacterial evolution, but …
functions that can be advantageous for the host, plays a key role in bacterial evolution, but …
[HTML][HTML] The CRISPR system: small RNA-guided defense in bacteria and archaea
FV Karginov, GJ Hannon - Molecular cell, 2010 - cell.com
All cellular systems evolve ways to combat predators and genomic parasites. In bacteria and
archaea, numerous resistance mechanisms have developed against phage. Our …
archaea, numerous resistance mechanisms have developed against phage. Our …
The complete genome of the crenarchaeon Sulfolobus solfataricus P2
Q She, RK Singh, F Confalonieri… - Proceedings of the …, 2001 - National Acad Sciences
The genome of the crenarchaeon Sulfolobus solfataricus P2 contains 2,992,245 bp on a
single chromosome and encodes 2,977 proteins and many RNAs. One-third of the encoded …
single chromosome and encodes 2,977 proteins and many RNAs. One-third of the encoded …