Human microbiome myths and misconceptions

AW Walker, L Hoyles - Nature microbiology, 2023 - nature.com
Over the past two decades, interest in human microbiome research has increased
exponentially. Regrettably, this increased activity has brought with it a degree of hype and …

Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation

S Liu, CD Moon, N Zheng, S Huws, S Zhao, J Wang - Microbiome, 2022 - Springer
Although there is now an extensive understanding of the diversity of microbial life on earth
through culture-independent metagenomic DNA sequence analyses, the isolation and …

The human gut microbiota: Metabolism and perspective in obesity

AC Gomes, C Hoffmann, JF Mota - Gut microbes, 2018 - Taylor & Francis
The gut microbiota has been recognized as an important factor in the development of
metabolic diseases such as obesity and is considered an endocrine organ involved in the …

Gallstone disease, obesity and the firmicutes/bacteroidetes ratio as a possible biomarker of gut dysbiosis

IN Grigor'eva - Journal of personalized medicine, 2020 - mdpi.com
Obesity is a major risk factor for develo** gallstone disease (GSD). Previous studies have
shown that obesity is associated with an elevated Firmicutes/Bacteroidetes ratio in the gut …

Towards standards for human fecal sample processing in metagenomic studies

PI Costea, G Zeller, S Sunagawa, E Pelletier… - Nature …, 2017 - nature.com
Technical variation in metagenomic analysis must be minimized to confidently assess the
contributions of microbiota to human health. Here we tested 21 representative DNA …

Shotgun metagenomics, from sampling to analysis

C Quince, AW Walker, JT Simpson, NJ Loman… - Nature …, 2017 - nature.com
Diverse microbial communities of bacteria, archaea, viruses and single-celled eukaryotes
have crucial roles in the environment and in human health. However, microbes are …

The madness of microbiome: attempting to find consensus “best practice” for 16S microbiome studies

J Pollock, L Glendinning, T Wisedchanwet… - Applied and …, 2018 - Am Soc Microbiol
The development and continuous improvement of high-throughput sequencing platforms
have stimulated interest in the study of complex microbial communities. Currently, the most …

Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

T Odamaki, K Kato, H Sugahara, N Hashikura… - BMC microbiology, 2016 - Springer
Background It has been reported that the composition of human gut microbiota changes with
age; however, few studies have used molecular techniques to investigate the long-term …

Interpretations of environmental microbial community studies are biased by the selected 16S rRNA (gene) amplicon sequencing pipeline

D Straub, N Blackwell, A Langarica-Fuentes… - Frontiers in …, 2020 - frontiersin.org
One of the major methods to identify microbial community composition, to unravel microbial
population dynamics, and to explore microbial diversity in environmental samples is high …

Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium

R Sinha, G Abu-Ali, E Vogtmann, AA Fodor… - Nature …, 2017 - nature.com
In order for human microbiome studies to translate into actionable outcomes for health, meta-
analysis of reproducible data from population-scale cohorts is needed. Achieving sufficient …