Human microbiome myths and misconceptions
Over the past two decades, interest in human microbiome research has increased
exponentially. Regrettably, this increased activity has brought with it a degree of hype and …
exponentially. Regrettably, this increased activity has brought with it a degree of hype and …
Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation
Although there is now an extensive understanding of the diversity of microbial life on earth
through culture-independent metagenomic DNA sequence analyses, the isolation and …
through culture-independent metagenomic DNA sequence analyses, the isolation and …
The human gut microbiota: Metabolism and perspective in obesity
The gut microbiota has been recognized as an important factor in the development of
metabolic diseases such as obesity and is considered an endocrine organ involved in the …
metabolic diseases such as obesity and is considered an endocrine organ involved in the …
Gallstone disease, obesity and the firmicutes/bacteroidetes ratio as a possible biomarker of gut dysbiosis
IN Grigor'eva - Journal of personalized medicine, 2020 - mdpi.com
Obesity is a major risk factor for develo** gallstone disease (GSD). Previous studies have
shown that obesity is associated with an elevated Firmicutes/Bacteroidetes ratio in the gut …
shown that obesity is associated with an elevated Firmicutes/Bacteroidetes ratio in the gut …
Towards standards for human fecal sample processing in metagenomic studies
Technical variation in metagenomic analysis must be minimized to confidently assess the
contributions of microbiota to human health. Here we tested 21 representative DNA …
contributions of microbiota to human health. Here we tested 21 representative DNA …
Shotgun metagenomics, from sampling to analysis
Diverse microbial communities of bacteria, archaea, viruses and single-celled eukaryotes
have crucial roles in the environment and in human health. However, microbes are …
have crucial roles in the environment and in human health. However, microbes are …
The madness of microbiome: attempting to find consensus “best practice” for 16S microbiome studies
The development and continuous improvement of high-throughput sequencing platforms
have stimulated interest in the study of complex microbial communities. Currently, the most …
have stimulated interest in the study of complex microbial communities. Currently, the most …
Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study
T Odamaki, K Kato, H Sugahara, N Hashikura… - BMC microbiology, 2016 - Springer
Background It has been reported that the composition of human gut microbiota changes with
age; however, few studies have used molecular techniques to investigate the long-term …
age; however, few studies have used molecular techniques to investigate the long-term …
Interpretations of environmental microbial community studies are biased by the selected 16S rRNA (gene) amplicon sequencing pipeline
One of the major methods to identify microbial community composition, to unravel microbial
population dynamics, and to explore microbial diversity in environmental samples is high …
population dynamics, and to explore microbial diversity in environmental samples is high …
Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium
In order for human microbiome studies to translate into actionable outcomes for health, meta-
analysis of reproducible data from population-scale cohorts is needed. Achieving sufficient …
analysis of reproducible data from population-scale cohorts is needed. Achieving sufficient …