A brief history of bioinformatics
It is easy for today's students and researchers to believe that modern bioinformatics
emerged recently to assist next-generation sequencing data analysis. However, the very …
emerged recently to assist next-generation sequencing data analysis. However, the very …
Generic GPCR residue numbers–aligning topology maps while minding the gaps
Generic residue numbers facilitate comparisons of, for example, mutational effects, ligand
interactions, and structural motifs. The numbering scheme by Ballesteros and Weinstein for …
interactions, and structural motifs. The numbering scheme by Ballesteros and Weinstein for …
Structural conservation of antibiotic interaction with ribosomes
The ribosome is a major target for clinically used antibiotics, but multidrug resistant
pathogenic bacteria are making our current arsenal of antimicrobials obsolete. Here we …
pathogenic bacteria are making our current arsenal of antimicrobials obsolete. Here we …
Robust atomistic modeling of materials, organometallic, and biochemical systems
S Spicher, S Grimme - Angewandte Chemie International …, 2020 - Wiley Online Library
Modern chemistry seems to be unlimited in molecular size and elemental composition. Metal‐
organic frameworks or biological macromolecules involve complex architectures and a large …
organic frameworks or biological macromolecules involve complex architectures and a large …
[HTML][HTML] Comparison of silver and molybdenum microfocus X-ray sources for single-crystal structure determination
The quality of diffraction data obtained using silver and molybdenum microsources has been
compared for six model compounds with a wide range of absorption factors. The …
compared for six model compounds with a wide range of absorption factors. The …
Polyclonal Secondary FGFR2 Mutations Drive Acquired Resistance to FGFR Inhibition in Patients with FGFR2 Fusion–Positive Cholangiocarcinoma
Genetic alterations in the fibroblast growth factor receptor (FGFR) pathway are promising
therapeutic targets in many cancers, including intrahepatic cholangiocarcinoma (ICC). The …
therapeutic targets in many cancers, including intrahepatic cholangiocarcinoma (ICC). The …
Alchemical binding free energy calculations in AMBER20: Advances and best practices for drug discovery
Predicting protein–ligand binding affinities and the associated thermodynamics of
biomolecular recognition is a primary objective of structure-based drug design. Alchemical …
biomolecular recognition is a primary objective of structure-based drug design. Alchemical …
Improved Treatment of Ligands and Coupling Effects in Empirical Calculation and Rationalization of pKa Values
CR Søndergaard, MHM Olsson… - Journal of chemical …, 2011 - ACS Publications
The new empirical rules for protein p K a predictions implemented in the PROPKA3. 0
software package (Olsson et al. J. Chem. Theory Comput. 2010, 7, 525–537) have been …
software package (Olsson et al. J. Chem. Theory Comput. 2010, 7, 525–537) have been …
Revealing noncovalent interactions
Molecular structure does not easily identify the intricate noncovalent interactions that govern
many areas of biology and chemistry, including design of new materials and drugs. We …
many areas of biology and chemistry, including design of new materials and drugs. We …
Natural products for glycaemic control: Polyphenols as inhibitors of alpha-amylase
Background α-Amylase plays an important role in starch digestion, the main source of
exogenous glucose in the human diet. Retarding glucose absorption through delaying …
exogenous glucose in the human diet. Retarding glucose absorption through delaying …