Insect mitochondrial genomics: implications for evolution and phylogeny

SL Cameron - Annual review of entomology, 2014 - annualreviews.org
The mitochondrial (mt) genome is, to date, the most extensively studied genomic system in
insects, outnumbering nuclear genomes tenfold and representing all orders versus very few …

[PDF][PDF] Molecular markers in phylogenetic studies-a review

A Patwardhan, S Ray, A Roy - Journal of phylogenetics & …, 2014 - academia.edu
Uses of molecular markers in the phylogenetic studies of various organisms have become
increasingly important in recent times. This review gives an overview of different molecular …

tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes

PP Chan, BY Lin, AJ Mak, TM Lowe - Nucleic acids research, 2021 - academic.oup.com
Abstract tRNAscan-SE has been widely used for transfer RNA (tRNA) gene prediction for
over twenty years, developed just as the first genomes were decoded. With the massive …

StarBEAST2 brings faster species tree inference and accurate estimates of substitution rates

HA Ogilvie, RR Bouckaert… - Molecular biology and …, 2017 - academic.oup.com
Fully Bayesian multispecies coalescent (MSC) methods like* BEAST estimate species trees
from multiple sequence alignments. Today thousands of genes can be sequenced for a …

Structure and variation of the mitochondrial genome of fishes

TP Satoh, M Miya, K Mabuchi, M Nishida - BMC genomics, 2016 - Springer
Background The mitochondrial (mt) genome has been used as an effective tool for
phylogenetic and population genetic analyses in vertebrates. However, the structure and …

[BOK][B] Phylogeography: the history and formation of species

JC Avise - 2000 - books.google.com
Phylogeography is a discipline concerned with various relationships between gene
genealogies—phylogenetics—and geography. The word “phylogeography” was coined in …

Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers

C Simon, F Frati, A Beckenbach… - Annals of the …, 1994 - academic.oup.com
DNA-sequence data from the mitochondrial genome are being used with increasing
frequency to estimate phylogenetic relationships among animal taxa. The advantage to …

Animal mitochondrial genomes

JL Boore - Nucleic acids research, 1999 - academic.oup.com
Animal mitochondrial DNA is a small, extrachromosomal genome, typically∼ 16 kb in size.
With few exceptions, all animal mitochondrial genomes contain the same 37 genes: two for …

[BOK][B] The comparative method in evolutionary biology

PH Harvey, MD Pagel - 1991 - academic.oup.com
From Darwin onward, it has been second nature for evolutionary biologists to think
comparatively because comparisons establish the generality of evolutionary phenomena …

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

N Galtier, B Nabholz, S Glémin, GDD Hurst - Molecular ecology, 2009 - Wiley Online Library
Over the last three decades, mitochondrial DNA has been the most popular marker of
molecular diversity, for a combination of technical ease‐of‐use considerations, and …