[PDF][PDF] A simple guide to de novo transcriptome assembly and annotation
A transcriptome constructed from short-read RNA sequencing (RNA-seq) is an easily
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
attainable proxy catalog of protein-coding genes when genome assembly is unnecessary …
Alternative animal models of aging research
S Holtze, E Gorshkova, S Braude… - Frontiers in Molecular …, 2021 - frontiersin.org
Most research on mechanisms of aging is being conducted in a very limited number of
classical model species, ie, laboratory mouse (Mus musculus), rat (Rattus norvegicus …
classical model species, ie, laboratory mouse (Mus musculus), rat (Rattus norvegicus …
Biosynthesis of medicinal tropane alkaloids in yeast
Tropane alkaloids from nightshade plants are neurotransmitter inhibitors that are used for
treating neuromuscular disorders and are classified as essential medicines by the World …
treating neuromuscular disorders and are classified as essential medicines by the World …
[HTML][HTML] Multi-omic analysis reveals divergent molecular events in scarring and regenerative wound healing
Regeneration is the holy grail of tissue repair, but skin injury typically yields fibrotic, non-
functional scars. Develo** pro-regenerative therapies requires rigorous understanding of …
functional scars. Develo** pro-regenerative therapies requires rigorous understanding of …
Aquatic and terrestrial cyanobacteria produce methane
Evidence is accumulating to challenge the paradigm that biogenic methanogenesis,
considered a strictly anaerobic process, is exclusive to archaea. We demonstrate that …
considered a strictly anaerobic process, is exclusive to archaea. We demonstrate that …
The axolotl genome and the evolution of key tissue formation regulators
Salamanders serve as important tetrapod models for developmental, regeneration and
evolutionary studies. An extensive molecular toolkit makes the Mexican axolotl (Ambystoma …
evolutionary studies. An extensive molecular toolkit makes the Mexican axolotl (Ambystoma …
Evolutionarily divergent mTOR remodels translatome for tissue regeneration
O Zhulyn, HD Rosenblatt, L Shokat, S Dai… - Nature, 2023 - nature.com
An outstanding mystery in biology is why some species, such as the axolotl, can regenerate
tissues whereas mammals cannot. Here, we demonstrate that rapid activation of protein …
tissues whereas mammals cannot. Here, we demonstrate that rapid activation of protein …
The giant axolotl genome uncovers the evolution, scaling, and transcriptional control of complex gene loci
S Schloissnig, A Kawaguchi… - Proceedings of the …, 2021 - National Acad Sciences
Vertebrates harbor recognizably orthologous gene complements but vary 100-fold in
genome size. How chromosomal organization scales with genome expansion is unclear …
genome size. How chromosomal organization scales with genome expansion is unclear …
[HTML][HTML] Annelid functional genomics reveal the origins of bilaterian life cycles
Indirect development with an intermediate larva exists in all major animal lineages, which
makes larvae central to most scenarios of animal evolution,,,,,,,,–. Yet how larvae evolved …
makes larvae central to most scenarios of animal evolution,,,,,,,,–. Yet how larvae evolved …
[HTML][HTML] Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution
ND Leigh, GS Dunlap, K Johnson, R Mariano… - Nature …, 2018 - nature.com
Regeneration of complex multi-tissue structures, such as limbs, requires the coordinated
effort of multiple cell types. In axolotl limb regeneration, the wound epidermis and blastema …
effort of multiple cell types. In axolotl limb regeneration, the wound epidermis and blastema …