Artificial intelligence assists precision medicine in cancer treatment

J Liao, X Li, Y Gan, S Han, P Rong, W Wang… - Frontiers in …, 2023 - frontiersin.org
Cancer is a major medical problem worldwide. Due to its high heterogeneity, the use of the
same drugs or surgical methods in patients with the same tumor may have different curative …

Stress-free single-cell transcriptomic profiling and functional genomics of murine eosinophils

C Borrelli, A Gurtner, IC Arnold, AE Moor - Nature Protocols, 2024 - nature.com
Eosinophils are a class of granulocytes with pleiotropic functions in homeostasis and
various human diseases. Nevertheless, they are absent from conventional single-cell RNA …

Intratumoral dendritic cell–CD4+ T helper cell niches enable CD8+ T cell differentiation following PD-1 blockade in hepatocellular carcinoma

A Magen, P Hamon, N Fiaschi, BY Soong, MD Park… - Nature medicine, 2023 - nature.com
Despite no apparent defects in T cell priming and recruitment to tumors, a large subset of T
cell rich tumors fail to respond to immune checkpoint blockade (ICB). We leveraged a …

Dictionary of immune responses to cytokines at single-cell resolution

A Cui, T Huang, S Li, A Ma, JL Pérez, C Sander… - Nature, 2024 - nature.com
Cytokines mediate cell–cell communication in the immune system and represent important
therapeutic targets,–. A myriad of studies have highlighted their central role in immune …

High-dimensional single-cell analysis of human natural killer cell heterogeneity

L Rebuffet, JE Melsen, B Escalière… - Nature …, 2024 - nature.com
Natural killer (NK) cells are innate lymphoid cells (ILCs) contributing to immune responses to
microbes and tumors. Historically, their classification hinged on a limited array of surface …

Identification of a broadly fibrogenic macrophage subset induced by type 3 inflammation

T Fabre, AMS Barron, SM Christensen, S Asano… - Science …, 2023 - science.org
Macrophages are central orchestrators of the tissue response to injury, with distinct
macrophage activation states playing key roles in fibrosis progression and resolution …

Doublet identification in single-cell sequencing data using scDblFinder

PL Germain, A Lun, CG Meixide, W Macnair… - …, 2022 - pmc.ncbi.nlm.nih.gov
Doublets are prevalent in single-cell sequencing data and can lead to artifactual findings. A
number of strategies have therefore been proposed to detect them. Building on the strengths …

A RORγt+ cell instructs gut microbiota-specific Treg cell differentiation

R Kedmi, TA Najar, KR Mesa, A Grayson, L Kroehling… - Nature, 2022 - nature.com
The mutualistic relationship of gut-resident microbiota and the host immune system
promotes homeostasis that ensures maintenance of the microbial community and of a …

[HTML][HTML] Intratumoral CD8+ T cells with a tissue-resident memory phenotype mediate local immunity and immune checkpoint responses in breast cancer

B Virassamy, F Caramia, P Savas, S Sant, J Wang… - Cancer Cell, 2023 - cell.com
CD8+ tumor-infiltrating lymphocytes with a tissue-resident memory T (T RM) cell phenotype
are associated with favorable prognosis in patients with triple-negative breast cancer …

[HTML][HTML] Vaccine-boosted CAR T crosstalk with host immunity to reject tumors with antigen heterogeneity

L Ma, A Hostetler, DM Morgan, L Maiorino, I Sulkaj… - Cell, 2023 - cell.com
Chimeric antigen receptor (CAR) T cell therapy effectively treats human cancer, but the loss
of the antigen recognized by the CAR poses a major obstacle. We found that in vivo vaccine …