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Roles of transposable elements in the regulation of mammalian transcription
Transposable elements (TEs) comprise about half of the mammalian genome. TEs often
contain sequences capable of recruiting the host transcription machinery, which they use to …
contain sequences capable of recruiting the host transcription machinery, which they use to …
Regulatory activities of transposable elements: from conflicts to benefits
Transposable elements (TEs) are a prolific source of tightly regulated, biochemically active
non-coding elements, such as transcription factor-binding sites and non-coding RNAs. Many …
non-coding elements, such as transcription factor-binding sites and non-coding RNAs. Many …
Transposable elements in human genetic disease
LM Payer, KH Burns - Nature Reviews Genetics, 2019 - nature.com
Transposable elements are abundant in the human genome, and great strides have been
made in pinpointing variations in these repetitive sequences using whole-genome …
made in pinpointing variations in these repetitive sequences using whole-genome …
Mammalian transposable elements and their impacts on genome evolution
Transposable elements (TEs) are genetic elements with the ability to mobilize and replicate
themselves in a genome. Mammalian genomes are dominated by TEs, which can reach …
themselves in a genome. Mammalian genomes are dominated by TEs, which can reach …
Long terminal repeats: from parasitic elements to building blocks of the transcriptional regulatory repertoire
The life cycle of endogenous retroviruses (ERVs), also called long terminal repeat (LTR)
retrotransposons, begins with transcription by RNA polymerase II followed by reverse …
retrotransposons, begins with transcription by RNA polymerase II followed by reverse …
Mammalian genome innovation through transposon domestication
Since the discovery of transposons, their sheer abundance in host genomes has puzzled
many. While historically viewed as largely harmless 'parasitic'DNAs during evolution …
many. While historically viewed as largely harmless 'parasitic'DNAs during evolution …
Transposable elements contribute to cell and species-specific chromatin loo** and gene regulation in mammalian genomes
Chromatin loo** is important for gene regulation, and studies of 3D chromatin structure
across species and cell types have improved our understanding of the principles governing …
across species and cell types have improved our understanding of the principles governing …
[HTML][HTML] Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy
A major challenge in biology is determining how evolutionarily novel characters originate;
however, mechanistic explanations for the origin of new characters are almost completely …
however, mechanistic explanations for the origin of new characters are almost completely …
FunSeq2: a framework for prioritizing noncoding regulatory variants in cancer
Identification of noncoding drivers from thousands of somatic alterations in a typical tumor is
a difficult and unsolved problem. We report a computational framework, FunSeq2, to …
a difficult and unsolved problem. We report a computational framework, FunSeq2, to …
Comparative genomics as a tool to understand evolution and disease
J Alföldi, K Lindblad-Toh - Genome research, 2013 - genome.cshlp.org
When the human genome project started, the major challenge was how to sequence a 3
billion letter code in an organized and cost-effective manner. When completed, the project …
billion letter code in an organized and cost-effective manner. When completed, the project …