The soil microbiome—from metagenomics to metaphenomics
Soil microorganisms carry out important processes, including support of plant growth and
cycling of carbon and other nutrients. However, the majority of soil microbes have not yet …
cycling of carbon and other nutrients. However, the majority of soil microbes have not yet …
Biotechnological basis of microbial consortia for the removal of pesticides from the environment
P Bhatt, K Bhatt, A Sharma, W Zhang… - Critical Reviews in …, 2021 - Taylor & Francis
The application of microbial strains as axenic cultures has frequently been employed in a
diverse range of sectors. In the natural environment, microbes exist as multispecies and …
diverse range of sectors. In the natural environment, microbes exist as multispecies and …
KBase: the United States department of energy systems biology knowledgebase
Although similar integrative tools exist (Supplementary Note 2), no other open platform
shares all KBase's features, which include the following:(i) comprehensive support for data …
shares all KBase's features, which include the following:(i) comprehensive support for data …
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants …
For over 10 years, ModelSEED has been a primary resource for the construction of draft
genome-scale metabolic models based on annotated microbial or plant genomes. Now …
genome-scale metabolic models based on annotated microbial or plant genomes. Now …
Novel pathway of acephate degradation by the microbial consortium ZQ01 and its potential for environmental bioremediation
Z Lin, S Pang, Z Zhou, X Wu, J Li, Y Huang… - Journal of Hazardous …, 2022 - Elsevier
The microbial degradation of acephate in pure cultures has been thoroughly explored, but
synergistic metabolism at the community level has rarely been investigated. Here, we report …
synergistic metabolism at the community level has rarely been investigated. Here, we report …
Complex yeast–bacteria interactions affect the yield of industrial ethanol fermentation
Sugarcane ethanol fermentation represents a simple microbial community dominated by S.
cerevisiae and co-occurring bacteria with a clearly defined functionality. In this study, we …
cerevisiae and co-occurring bacteria with a clearly defined functionality. In this study, we …
Saccharibacteria (TM7) in the human oral microbiome
Bacteria from the Saccharibacteria phylum (formerly known as TM7) are ubiquitous
members of the human oral microbiome and are part of the Candidate Phyla Radiation …
members of the human oral microbiome and are part of the Candidate Phyla Radiation …
[HTML][HTML] From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes
Metagenomic sequencing of complete microbial communities has greatly enhanced our
understanding of the taxonomic composition of microbiotas. This has led to breakthrough …
understanding of the taxonomic composition of microbiotas. This has led to breakthrough …
Unlocking secrets of microbial ecotoxicology: Recent achievements and future challenges
Environmental pollution is one of the main challenges faced by humanity. By their ubiquity
and vast range of metabolic capabilities, microorganisms are affected by pollution with …
and vast range of metabolic capabilities, microorganisms are affected by pollution with …
[HTML][HTML] Metabolic modelling approaches for describing and engineering microbial communities
Microbes do not live in isolation but in microbial communities. The relevance of microbial
communities is increasing due to growing awareness of their influence on a huge number of …
communities is increasing due to growing awareness of their influence on a huge number of …