Sequencing and characterizing short tandem repeats in the human genome

HA Tanudisastro, IW Deveson, H Dashnow… - Nature Reviews …, 2024 - nature.com
Short tandem repeats (STRs) are highly polymorphic sequences throughout the human
genome that are composed of repeated copies of a 1–6-bp motif. Over 1 million variable …

[HTML][HTML] New genetic markers for Sapotaceae phylogenomics: More than 600 nuclear genes applicable from family to population levels

C Christe, CG Boluda, D Koubínová, L Gautier… - Molecular Phylogenetics …, 2021 - Elsevier
Some tropical plant families, such as the Sapotaceae, have a complex taxonomy, which can
be resolved using Next Generation Sequencing (NGS). For most groups however …

Low temperature isothermal amplification of microsatellites drastically reduces stutter artifact formation and improves microsatellite instability detection in cancer

A Daunay, A Duval, LG Baudrin, O Buhard… - Nucleic acids …, 2019 - academic.oup.com
Microsatellites are polymorphic short tandem repeats of 1–6 nucleotides ubiquitously
present in the genome that are extensively used in living organisms as genetic markers and …

Specific splice junction detection in single cells with SICILIAN

R Dehghannasiri, JE Olivieri, A Damljanovic… - Genome Biology, 2021 - Springer
Precise splice junction calls are currently unavailable in scRNA-seq pipelines such as the
10x Chromium platform but are critical for understanding single-cell biology. Here, we …

[HTML][HTML] The Potential of HTS Approaches for Accurate Genoty** in Grapevine (Vitis vinifera L.)

U Kunej, A Dervishi, V Laucou, J Jakše, N Štajner - Genes, 2020 - mdpi.com
The main challenge associated with genoty** based on conventional length
polymorphisms is the cross-laboratory standardization of allele sizes. This step requires the …

[หนังสือ][B] Using High-Fidelity Long-Read Sequencing to Better Detect and Understand Short Tandem Repeat Variation in Humans

DR Lougheed - 2022 - search.proquest.com
Variation in short tandem repeats (STRs) is implicated in many diseases, often in the form of
STR expansion disorders, and complex traits. Traditional PCR-based STR genoty** has …