Into the plastisphere, where only the generalists thrive: early insights in plastisphere microbial community succession
The ubiquity of plastic debris in marine environments raises the question, what impacts do
plastics have on our marine microbiota? To investigate this, we applied bacterial 16S rRNA …
plastics have on our marine microbiota? To investigate this, we applied bacterial 16S rRNA …
Grapevine wood microbiome analysis identifies key fungal pathogens and potential interactions with the bacterial community implicated in grapevine trunk disease …
Abstract Background Grapevine trunk diseases (GTDs) is a disease complex caused by
wood pathogenic fungi belonging to genera like Phaeomoniella, Phaeoacremonium …
wood pathogenic fungi belonging to genera like Phaeomoniella, Phaeoacremonium …
Plant secondary metabolite-dependent plant-soil feedbacks can improve crop yield in the field
V Gfeller, J Waelchli, S Pfister, G Deslandes-Hérold… - Elife, 2023 - elifesciences.org
Plant secondary metabolites that are released into the rhizosphere alter biotic and abiotic
soil properties, which in turn affect the performance of other plants. How this type of plant …
soil properties, which in turn affect the performance of other plants. How this type of plant …
A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities
Microbial communities contain a broad phylogenetic diversity of organisms; however, the
majority of methods center on describing bacteria and archaea. Fungi are important …
majority of methods center on describing bacteria and archaea. Fungi are important …
[HTML][HTML] Short-term response of soil bacterial and fungal communities to fire in rotational shifting cultivation, northern Thailand
Soil microbial communities are ubiquitous and essential for the functioning of the soil
system. The use of fire is a common practice in rotational shifting cultivation (RSC) to clear …
system. The use of fire is a common practice in rotational shifting cultivation (RSC) to clear …
Evaluation of pre-treated healthcare wastes during COVID-19 pandemic reveals pathogenic microbiota, antibiotics residues, and antibiotic resistance genes against …
The disposal of healthcare waste without prior elimination of pathogens and hazardous
contaminants has negative effects on the environment and public health. This study aimed to …
contaminants has negative effects on the environment and public health. This study aimed to …
Heritable microbiome variation is correlated with source environment in locally adapted maize varieties
Beneficial interactions with microorganisms are pivotal for crop performance and resilience.
However, it remains unclear how heritable the microbiome is with respect to the host plant …
However, it remains unclear how heritable the microbiome is with respect to the host plant …
Diversity, distribution and ecology of fungal communities present in Antarctic lake sediments uncovered by DNA metabarcoding
LMD de Souza, JM Lirio, SH Coria, FAC Lopes… - Scientific Reports, 2022 - nature.com
We assessed fungal diversity in sediments obtained from four lakes in the South Shetland
Islands and James Ross Island, Antarctica, using DNA metabarcoding. We detected 218 …
Islands and James Ross Island, Antarctica, using DNA metabarcoding. We detected 218 …
Dadasnake, a Snakemake implementation of DADA2 to process amplicon sequencing data for microbial ecology
C Weißbecker, B Schnabel, A Heintz-Buschart - GigaScience, 2020 - academic.oup.com
Background Amplicon sequencing of phylogenetic marker genes, eg, 16S, 18S, or ITS
ribosomal RNA sequences, is still the most commonly used method to determine the …
ribosomal RNA sequences, is still the most commonly used method to determine the …
Cottonseed press cake as a potential diet for industrially farmed black soldier fly larvae triggers adaptations of their bacterial and fungal gut microbiota
Black soldier fly larvae (Hermetia illucens, Diptera: Stratiomyidae) are used for the
bioconversion of organic side products into valuable compounds such as proteins, lipids …
bioconversion of organic side products into valuable compounds such as proteins, lipids …