Housekee** genes are involved in basic cell maintenance and, therefore, are expected to
maintain constant expression levels in all cells and conditions. Identification of these genes …

Plant responses to different stresses are highly complex and involve changes at the
transcriptome, cellular, and physiological levels. Recent evidence shows that plants respond …

To demonstrate the benefits of RNA-Seq over microarray in transcriptome profiling, both
RNA-Seq and microarray analyses were performed on RNA samples from a human T cell …

Differential analysis of gene and transcript expression using high-throughput RNA
sequencing (RNA-seq) is complicated by several sources of measurement variability and …

We present GOseq, an application for performing Gene Ontology (GO) analysis on RNA-seq
data. GO analysis is widely used to reduce complexity and highlight biological processes in …

The human genome contains many thousands of long noncoding RNAs (lncRNAs). While
several studies have demonstrated compelling biological and disease roles for individual …

The parts of the genome transcribed by a cell or tissue reflect the biological processes and
functions it carries out. We characterized the features of mammalian tissue transcriptomes at …

High-throughput sequencing technologies, also known as next-generation sequencing
(NGS) technologies, have revolutionized the way that genomic research is advancing. In …

One of the most striking examples of plant developmental plasticity to changing
environmental conditions is the modulation of root system architecture (RSA) in response to …

The interrelationships between our diets and the structure and operations of our gut
microbial communities are poorly understood. A model community of 10 sequenced human …