Nested sampling for physical scientists
G Ashton, N Bernstein, J Buchner, X Chen… - Nature Reviews …, 2022 - nature.com
Abstract This Primer examines Skilling's nested sampling algorithm for Bayesian inference
and, more broadly, multidimensional integration. The principles of nested sampling are …
and, more broadly, multidimensional integration. The principles of nested sampling are …
[HTML][HTML] Phase diagrams—Why they matter and how to predict them
Understanding the thermodynamic stability and metastability of materials can help us to, for
example, gauge whether crystalline polymorphs in pharmaceutical formulations are likely to …
example, gauge whether crystalline polymorphs in pharmaceutical formulations are likely to …
Dynamic nested sampling: an improved algorithm for parameter estimation and evidence calculation
We introduce dynamic nested sampling: a generalisation of the nested sampling algorithm
in which the number of “live points” varies to allocate samples more efficiently. In empirical …
in which the number of “live points” varies to allocate samples more efficiently. In empirical …
Energy landscapes for proteins: From single funnels to multifunctional systems
This report advances the hypothesis that multifunctional systems may be associated with
multifunnel potential and free energy landscapes, with particular focus on biomolecules. It …
multifunnel potential and free energy landscapes, with particular focus on biomolecules. It …
Perspective: Insight into reaction coordinates and dynamics from the potential energy landscape
DJ Wales - The Journal of chemical physics, 2015 - pubs.aip.org
This perspective focuses on conceptual and computational aspects of the potential energy
landscape framework. It has two objectives: first to summarise some key developments of …
landscape framework. It has two objectives: first to summarise some key developments of …
Improving gradient-guided nested sampling for posterior inference
We present a performant, general-purpose gradient-guided nested sampling algorithm, ${\tt
GGNS} $, combining the state of the art in differentiable programming, Hamiltonian slice …
GGNS} $, combining the state of the art in differentiable programming, Hamiltonian slice …
Nested sampling for materials
We review the materials science applications of the nested sampling (NS) method, which
was originally conceived for calculating the evidence in Bayesian inference. We describe …
was originally conceived for calculating the evidence in Bayesian inference. We describe …
Determining pressure-temperature phase diagrams of materials
We extend the nested sampling algorithm to simulate materials under periodic boundary
and constant pressure conditions, and show how it can be used to determine the complete …
and constant pressure conditions, and show how it can be used to determine the complete …
100 Years of the Lennard-Jones Potential
P Schwerdtfeger, DJ Wales - Journal of Chemical Theory and …, 2024 - ACS Publications
It is now 100 years since Lennard-Jones published his first paper introducing the now
famous potential that bears his name. It is therefore timely to reflect on the many …
famous potential that bears his name. It is therefore timely to reflect on the many …