Nested sampling for physical scientists

G Ashton, N Bernstein, J Buchner, X Chen… - Nature Reviews …, 2022 - nature.com
Abstract This Primer examines Skilling's nested sampling algorithm for Bayesian inference
and, more broadly, multidimensional integration. The principles of nested sampling are …

[HTML][HTML] Phase diagrams—Why they matter and how to predict them

PY Chew, A Reinhardt - The Journal of Chemical Physics, 2023 - pubs.aip.org
Understanding the thermodynamic stability and metastability of materials can help us to, for
example, gauge whether crystalline polymorphs in pharmaceutical formulations are likely to …

Dynamic nested sampling: an improved algorithm for parameter estimation and evidence calculation

E Higson, W Handley, M Hobson, A Lasenby - Statistics and Computing, 2019 - Springer
We introduce dynamic nested sampling: a generalisation of the nested sampling algorithm
in which the number of “live points” varies to allocate samples more efficiently. In empirical …

Nested sampling methods

J Buchner - Statistic Surveys, 2023 - projecteuclid.org
Nested sampling (NS) computes parameter posterior distributions and makes Bayesian
model comparison computationally feasible. Its strengths are the unsupervised navigation of …

Energy landscapes for proteins: From single funnels to multifunctional systems

K Röder, JA Joseph, BE Husic… - Advanced Theory and …, 2019 - Wiley Online Library
This report advances the hypothesis that multifunctional systems may be associated with
multifunnel potential and free energy landscapes, with particular focus on biomolecules. It …

Perspective: Insight into reaction coordinates and dynamics from the potential energy landscape

DJ Wales - The Journal of chemical physics, 2015 - pubs.aip.org
This perspective focuses on conceptual and computational aspects of the potential energy
landscape framework. It has two objectives: first to summarise some key developments of …

Improving gradient-guided nested sampling for posterior inference

P Lemos, N Malkin, W Handley, Y Bengio… - arxiv preprint arxiv …, 2023 - arxiv.org
We present a performant, general-purpose gradient-guided nested sampling algorithm, ${\tt
GGNS} $, combining the state of the art in differentiable programming, Hamiltonian slice …

Nested sampling for materials

LB Pártay, G Csányi, N Bernstein - The European Physical Journal B, 2021 - Springer
We review the materials science applications of the nested sampling (NS) method, which
was originally conceived for calculating the evidence in Bayesian inference. We describe …

Determining pressure-temperature phase diagrams of materials

RJN Baldock, LB Pártay, AP Bartók, MC Payne… - Physical Review B, 2016 - APS
We extend the nested sampling algorithm to simulate materials under periodic boundary
and constant pressure conditions, and show how it can be used to determine the complete …

100 Years of the Lennard-Jones Potential

P Schwerdtfeger, DJ Wales - Journal of Chemical Theory and …, 2024 - ACS Publications
It is now 100 years since Lennard-Jones published his first paper introducing the now
famous potential that bears his name. It is therefore timely to reflect on the many …