Noncanonical amino acids in biocatalysis

Z Birch-Price, FJ Hardy, TM Lister, AR Kohn… - Chemical …, 2024 - ACS Publications
In recent years, powerful genetic code reprogramming methods have emerged that allow
new functional components to be embedded into proteins as noncanonical amino acid …

Machine learning for functional protein design

P Notin, N Rollins, Y Gal, C Sander, D Marks - Nature biotechnology, 2024 - nature.com
Recent breakthroughs in AI coupled with the rapid accumulation of protein sequence and
structure data have radically transformed computational protein design. New methods …

Unsupervised evolution of protein and antibody complexes with a structure-informed language model

VR Shanker, TUJ Bruun, BL Hie, PS Kim - Science, 2024 - science.org
Large language models trained on sequence information alone can learn high-level
principles of protein design. However, beyond sequence, the three-dimensional structures of …

Opportunities and challenges for machine learning-assisted enzyme engineering

J Yang, FZ Li, FH Arnold - ACS Central Science, 2024 - ACS Publications
Enzymes can be engineered at the level of their amino acid sequences to optimize key
properties such as expression, stability, substrate range, and catalytic efficiency─ or even to …

Sparks of function by de novo protein design

AE Chu, T Lu, PS Huang - Nature biotechnology, 2024 - nature.com
Abstract Information in proteins flows from sequence to structure to function, with each step
causally driven by the preceding one. Protein design is founded on inverting this process …

SYNBIP 2.0: epitopes map**, sequence expansion and scaffolds discovery for synthetic binding protein innovation

Y Li, F Li, Z Duan, R Liu, W Jiao, H Wu… - Nucleic Acids …, 2025 - academic.oup.com
Synthetic binding proteins (SBPs) represent a pivotal class of artificially engineered proteins,
meticulously crafted to exhibit targeted binding properties and specific functions. Here, the …

International Scientific Report on the Safety of Advanced AI (Interim Report)

Y Bengio, S Mindermann, D Privitera… - arxiv preprint arxiv …, 2024 - arxiv.org
This is the interim publication of the first International Scientific Report on the Safety of
Advanced AI. The report synthesises the scientific understanding of general-purpose AI--AI …

[HTML][HTML] Generative artificial intelligence for de novo protein design

A Winnifrith, C Outeiral, BL Hie - Current Opinion in Structural Biology, 2024 - Elsevier
Engineering new molecules with desirable functions and properties has the potential to
extend our ability to engineer proteins beyond what nature has so far evolved. Advances in …

Design of pseudosymmetric protein hetero-oligomers

RD Kibler, S Lee, MA Kennedy, BIM Wicky… - Nature …, 2024 - nature.com
Pseudosymmetric hetero-oligomers with three or more unique subunits with overall
structural (but not sequence) symmetry play key roles in biology, and systematic approaches …

The Nobel Prize in Chemistry: past, present, and future of AI in biology

LA Abriata - Communications Biology, 2024 - nature.com
The work by Hassabis and Jumper on protein structure prediction together with Baker's
supremacy in de novo protein design set the stage for a future where AI not only deciphers …